Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RPL27AP8-201ENST00000424277 446 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 HMGB1P18-201ENST00000438801 619 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 RPL26P6-201ENST00000440913 438 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 TRIM60P18-201ENST00000441518 828 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AC108059.3-201ENST00000456388 214 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 RPL31P3-201ENST00000458430 332 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 RPL31P60-201ENST00000478450 367 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 MIR3186-201ENST00000577404 85 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 BNIP3P8-201ENST00000597863 560 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AC012065.4-201ENST00000602445 679 ntBASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF541Q9H0D2 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.34□□□□□ -1.88
ZNF541Q9H0D2 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.34□□□□□ -1.88
ZNF541Q9H0D2 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
ZNF541Q9H0D2 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 MIR1290-201ENST00000408735 78 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC018630.2-202ENST00000422992 927 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 PPP1R11P2-201ENST00000423543 382 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 Z83846.1-201ENST00000446798 265 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC114797.1-201ENST00000514003 728 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 Y_RNA.695-201ENST00000516715 107 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC060788.1-201ENST00000521318 469 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC123904.2-201ENST00000548059 300 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 OR4H12P-201ENST00000556269 907 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AL356432.3-201ENST00000568952 465 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC137800.2-201ENST00000574375 120 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC009159.1-201ENST00000618386 642 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AL603758.1-201ENST00000618654 241 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC012150.2-201ENST00000621300 544 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC009878.1-201ENST00000621819 340 ntBASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF541Q9H0D2 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 MIR19A-201ENST00000384878 82 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 MIR493-201ENST00000385254 89 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AL109755.1-201ENST00000401791 649 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 RPL21P24-201ENST00000413752 448 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 SPA17P1-201ENST00000416656 452 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC245291.1-201ENST00000419501 328 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 SEPT2P1-201ENST00000419651 180 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 YPEL5P1-201ENST00000419731 367 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AL356867.1-201ENST00000429623 299 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 SNRPFP4-201ENST00000456366 242 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 OR5BM1P-201ENST00000512021 366 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC022878.1-201ENST00000530684 149 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AP002453.2-201ENST00000533503 320 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AL356057.1-201ENST00000533798 831 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 ZNF519P3-201ENST00000557158 1032 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 MIR3921-201ENST00000577308 85 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC105224.1-201ENST00000587055 421 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC112191.3-201ENST00000604371 277 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC008277.2-201ENST00000605196 797 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AL355472.4-201ENST00000610233 626 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 TUG1_2.1-201ENST00000614234 87 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 AC008250.2-201ENST00000615261 205 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms