Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP006587.4-201ENST00000526053 529 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC011611.1-201ENST00000552179 197 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AL163153.1-201ENST00000554223 283 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AL391156.1-201ENST00000554965 554 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 MIR3921-201ENST00000577308 85 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 MIR7851-201ENST00000610611 160 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC099778.2-201ENST00000610904 211 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC138649.3-201ENST00000622154 254 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AL392088.2-201ENST00000637607 285 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-1Q99801 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-1Q99801 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-1Q99801 RNA5SP383-201ENST00000362934 120 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 RNU6-1284P-201ENST00000363701 100 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 RNA5SP72-201ENST00000364442 117 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 RNU5A-6P-201ENST00000384136 116 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC114491.1-201ENST00000416095 246 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 NDUFB4P7-201ENST00000423198 363 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 DNAJC19P4-201ENST00000440115 345 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC020550.1-201ENST00000447385 163 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL136380.1-201ENST00000447970 162 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC132479.1-201ENST00000449160 144 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC115115.1-201ENST00000449927 248 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 RPS23P3-201ENST00000470993 430 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 IGKV2-26-201ENST00000518305 343 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AC007619.2-201ENST00000605743 379 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL121992.2-201ENST00000606262 256 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 AL161912.2-201ENST00000565707 3007 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 AF117829.1-206ENST00000621883 3802 ntBASIC2.86□□□□□ -1.95
NKX3-1Q99801 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
NKX3-1Q99801 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIR148B-201ENST00000362252 99 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIR208A-201ENST00000362287 71 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 SNORA70.4-201ENST00000365509 134 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 RNU6-805P-201ENST00000365643 106 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 SMIM11P1-201ENST00000369586 178 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 RNU6-14P-201ENST00000384630 106 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIR23A-201ENST00000385245 73 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AL591034.1-201ENST00000407447 340 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC137499.1-201ENST00000427602 88 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 OR2AS1P-201ENST00000427827 319 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC133104.1-201ENST00000429100 218 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC092573.2-201ENST00000434546 243 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC009969.1-201ENST00000438726 172 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 PRDX3P3-201ENST00000447765 522 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 snoU13.22-201ENST00000459428 104 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 RPL7P5-201ENST00000471472 736 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 RPS3AP14-201ENST00000483907 780 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC026427.2-201ENST00000506228 536 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC108078.1-201ENST00000508073 725 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC074250.1-201ENST00000511117 192 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 RNU2-10P-201ENST00000516375 211 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 SCARNA15.2-201ENST00000516409 127 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 CASP1P1-201ENST00000526345 212 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC011979.2-201ENST00000527568 352 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 FAM92A1P1-201ENST00000528023 890 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC103843.2-201ENST00000530523 682 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 TRAV37-201ENST00000553906 342 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms