Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS39Q96JC1 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 RNU6-853P-201ENST00000364306 107 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 CCNG1P1-201ENST00000406783 885 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 RNU2-49P-201ENST00000410666 184 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC023141.4-201ENST00000412031 328 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL139132.1-201ENST00000431587 344 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 RSU1P2-202ENST00000437884 485 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL354941.1-201ENST00000438600 464 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC008571.1-201ENST00000467232 300 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 S100A11P2-201ENST00000467589 312 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 RPS29P20-201ENST00000489592 171 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC135721.1-201ENST00000497954 479 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 RNU6-826P-201ENST00000516827 104 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC109329.2-201ENST00000519658 482 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC022080.3-201ENST00000544433 482 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 ELOCP32-201ENST00000548625 324 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL158211.1-201ENST00000566763 763 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 MIR5194-201ENST00000582634 120 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 UBE2L4-201ENST00000587688 464 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AF038458.1-201ENST00000588406 262 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL391001.1-201ENST00000602747 715 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 RPL12P50-201ENST00000603116 116 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC021171.1-201ENST00000603137 706 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL357094.1-201ENST00000603845 844 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC018714.1-201ENST00000605028 208 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC013562.2-201ENST00000611632 603 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AL158801.5-201ENST00000623123 465 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC092192.1-201ENST00000633154 1018 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC007671.2-201ENST00000637344 619 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 AC099063.3-201ENST00000642066 185 ntBASIC2.74□□□□□ -1.97
VPS39Q96JC1 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
VPS39Q96JC1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC009902.3-201ENST00000606235 2172 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNU6-462P-201ENST00000362659 105 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNA5SP393-201ENST00000363423 117 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNU6-660P-201ENST00000364566 109 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNA5SP88-201ENST00000365560 109 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 SNORA9-201ENST00000384215 133 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNU6-750P-201ENST00000390946 107 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC119751.3-201ENST00000399720 670 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 EEF1A1P41-201ENST00000414667 207 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC083875.1-201ENST00000419509 405 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 RPL23AP83-201ENST00000434984 473 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC090096.1-201ENST00000489168 390 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC022447.1-201ENST00000515358 464 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 RNU5F-8P-201ENST00000515941 111 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AP003461.1-201ENST00000528866 78 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC013828.2-201ENST00000532487 235 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 ELOCP31-201ENST00000540463 467 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AL359212.1-201ENST00000556608 614 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC009094.1-201ENST00000564443 426 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC136618.2-201ENST00000575091 400 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 MIR544B-201ENST00000582372 78 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AL161756.2-201ENST00000604597 246 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 Z99289.3-201ENST00000605586 594 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC093732.2-201ENST00000607950 274 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 SNHG22-203ENST00000617833 660 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 AC068057.2-201ENST00000624047 895 ntBASIC2.73□□□□□ -1.97
VPS39Q96JC1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VPS39Q96JC1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS39Q96JC1 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 MIR592-201ENST00000384959 97 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC096649.2-201ENST00000416186 393 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 UBE2FP1-201ENST00000416536 447 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 SEPT2P1-201ENST00000419651 180 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC005005.2-201ENST00000420779 380 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms