Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC018889.1-201ENST00000605372 397 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 PRR13P7-201ENST00000605538 430 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC012531.5-201ENST00000611375 151 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC107871.2-201ENST00000612894 502 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHFRQ96EP1 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHFRQ96EP1 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 RNA5SP52-201ENST00000362448 134 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 RNU6-238P-201ENST00000363313 106 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 MIR30B-201ENST00000384850 88 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 SNORD37.1-201ENST00000390968 65 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 SSXP10-201ENST00000402595 565 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 HMGN2P21-201ENST00000447764 270 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 HSPD1P15-201ENST00000505573 1122 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 RNU6-273P-201ENST00000516937 96 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 COX6CP8-201ENST00000522620 226 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHFRQ96EP1 MTCO3P23-201ENST00000561363 289 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 RPL23AP87-202ENST00000573039 466 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC025627.2-201ENST00000576220 160 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC062037.2-201ENST00000610137 73 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC064801.1-201ENST00000612025 407 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AC048347.1-201ENST00000624621 427 ntBASIC4.14□□□□□ -1.75
CHFRQ96EP1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
CHFRQ96EP1 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC106871.1-201ENST00000568324 3102 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 SNORA60-201ENST00000362396 134 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 Y_RNA.167-201ENST00000363735 109 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 RNA5SP387-201ENST00000364226 106 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 RNU6-1151P-201ENST00000384684 107 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 MIR449B-201ENST00000384995 97 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 RNU6-272P-201ENST00000411028 104 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 TPMTP2-201ENST00000414372 726 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 ARL5AP4-201ENST00000430731 512 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 RPL21P112-201ENST00000434403 463 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 FABP5P14-201ENST00000437273 393 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC104308.1-201ENST00000454621 333 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 HMGN2P7-201ENST00000456186 273 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 RPS15AP17-201ENST00000470598 390 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AL139099.1-201ENST00000497398 403 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC078918.1-201ENST00000498515 228 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 RN7SKP24-201ENST00000515888 284 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 SNORA25.10-201ENST00000515926 124 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 RNU6-1143P-201ENST00000516125 104 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC087854.1-201ENST00000519706 414 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AP000889.1-201ENST00000530968 660 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 NCAPGP2-201ENST00000557911 754 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC018462.2-201ENST00000605375 395 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC121334.2-201ENST00000605387 271 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC069200.1-201ENST00000609511 323 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC004696.1-201ENST00000614345 607 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC244100.1-202ENST00000621554 382 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 AC138627.2-201ENST00000624202 601 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CHFRQ96EP1 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CHFRQ96EP1 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHFRQ96EP1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
CHFRQ96EP1 AL049641.1-201ENST00000441055 1948 ntBASIC4.13□□□□□ -1.75
CHFRQ96EP1 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 MTND5P30-201ENST00000452896 1731 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms