Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC007490.1-201ENST00000624321 703 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL136313.1-201ENST00000624804 202 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC073346.2-201ENST00000624724 2058 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC092125.1-201ENST00000562568 1995 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL049641.1-201ENST00000441055 1948 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AL139276.1-201ENST00000311910 1001 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 MIR6073-201ENST00000352083 89 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 VPS26BP1-201ENST00000417155 755 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC098592.1-201ENST00000419352 333 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 Z82209.1-201ENST00000422141 2135 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC010153.1-201ENST00000432862 727 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 CR769767.1-201ENST00000436337 346 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AL049734.2-201ENST00000441066 616 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 BMI1P1-201ENST00000445879 941 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 NANOGNBP1-201ENST00000448444 480 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 S100A11P2-201ENST00000467589 312 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC010631.1-201ENST00000474150 156 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 RBM43P1-201ENST00000476891 1081 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 RPS29P26-201ENST00000477483 171 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 RNU6-1129P-201ENST00000515964 104 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP216-201ENST00000516111 123 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC123904.3-201ENST00000547218 814 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC090888.1-201ENST00000561335 1141 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 TPMTP1-201ENST00000592307 737 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 MIR6895-201ENST00000613497 78 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC010133.1-201ENST00000615809 842 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC021755.4-201ENST00000616620 456 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC104010.1-201ENST00000616889 150 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AP000676.3-201ENST00000623299 569 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 AC008993.2-201ENST00000631744 806 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 MTND1P37-201ENST00000636562 264 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 SDAD1P2-201ENST00000441308 2028 ntBASIC2.28□□□□□ -2.04
CCDC54Q8NEL0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 Y_RNA.46-201ENST00000362695 102 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 RPLP0P7-201ENST00000416050 667 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 SPA17P1-201ENST00000416656 452 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC009414.1-201ENST00000427200 443 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 RPL7L1P10-201ENST00000427790 463 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AL512844.2-201ENST00000433990 593 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 UBE2FP3-201ENST00000436366 524 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 ARPC3P1-201ENST00000437218 533 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC005094.1-201ENST00000440420 368 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 MTCO3P45-201ENST00000443036 613 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC104978.1-201ENST00000449387 391 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 RPS20P20-201ENST00000460498 340 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC034222.1-201ENST00000494052 532 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC106872.3-201ENST00000495104 446 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC026427.2-201ENST00000506228 536 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 SNORA31.11-201ENST00000516528 139 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 RN7SKP287-201ENST00000516546 266 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC100870.1-201ENST00000522035 505 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 SUB1P1-201ENST00000524415 382 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AP002748.2-201ENST00000528671 348 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC090888.2-201ENST00000559765 1144 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AP000811.1-201ENST00000603803 651 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 DPPA3P3-201ENST00000603842 430 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AL357094.1-201ENST00000603845 844 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC136601.2-201ENST00000604356 474 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms