Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SRIP2-201ENST00000428470 166 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 Z98742.2-201ENST00000431564 187 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 NANOGP2-201ENST00000435391 727 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXA1P55317 AC097493.1-201ENST00000463958 372 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 RPL30P5-201ENST00000494923 336 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 HMGN1P28-201ENST00000521340 364 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXA1P55317 YWHAZP1-201ENST00000556286 722 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 MIR1273D-201ENST00000577266 86 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 MIR4448-201ENST00000584360 86 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC008739.2-201ENST00000597006 317 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 BNIP3P27-201ENST00000599991 412 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC104763.2-201ENST00000604179 382 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AL136363.1-201ENST00000605349 337 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC004067.1-201ENST00000608733 700 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AL357080.1-201ENST00000617394 239 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 MIR6130-201ENST00000619419 109 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC002550.2-201ENST00000621246 394 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AL445264.1-201ENST00000621719 171 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC008443.7-201ENST00000622195 246 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 DUXAP9-208ENST00000622815 614 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC231657.1-201ENST00000624313 397 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC068880.5-201ENST00000624331 290 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC110079.1-202ENST00000635213 138 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC099654.8-201ENST00000637757 681 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AC005832.2-201ENST00000538921 1430 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
FOXA1P55317 AL079343.1-201ENST00000572358 1771 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC009487.4-201ENST00000624969 3585 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXA1P55317 RNU5E-10P-201ENST00000363506 118 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
FOXA1P55317 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXA1P55317 RNA5SP354-201ENST00000391247 136 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL356320.2-201ENST00000417263 507 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 TIMM9P2-201ENST00000419324 266 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 HMGN2P38-201ENST00000423806 265 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL356867.1-201ENST00000429623 299 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 OR4K11P-201ENST00000431829 904 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXA1P55317 MTCO1P53-201ENST00000441633 699 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC096638.1-201ENST00000444678 216 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC002381.1-201ENST00000447049 280 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXA1P55317 MTND2P24-201ENST00000453434 806 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 snoU13.8-201ENST00000458890 104 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL049829.1-201ENST00000465411 156 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 MTND4LP3-201ENST00000468320 276 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL049874.1-201ENST00000489560 388 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC106872.3-201ENST00000495104 446 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 RNU6-714P-201ENST00000516963 103 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXA1P55317 FAM92A1P1-201ENST00000528023 890 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
FOXA1P55317 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXA1P55317 AMZ2P1-203ENST00000565833 850 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 AL512347.1-201ENST00000566420 503 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 BNIP3P26-201ENST00000600827 554 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 BBIP1P1-201ENST00000602999 279 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC069431.2-201ENST00000604149 1099 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC013553.2-201ENST00000604244 589 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC011451.2-201ENST00000604303 598 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC021749.1-201ENST00000604322 607 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL158211.4-201ENST00000606988 584 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXA1P55317 AF129408.1-201ENST00000608767 431 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AL049777.1-201ENST00000622740 518 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXA1P55317 MIR219B-201ENST00000637023 88 ntBASIC1.87□□□□□ -2.11
FOXA1P55317 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXA1P55317 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.87□□□□□ -2.11
FOXA1P55317 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
FOXA1P55317 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA1P55317 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
FOXA1P55317 OR4G2P-202ENST00000641004 1759 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNU1-105P-201ENST00000363470 161 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNU6-560P-201ENST00000364007 108 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNU6-270P-201ENST00000364131 105 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNU6-413P-201ENST00000384115 107 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms