Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.9□□□□□ -1.95
SOX3P41225 HMGB3P15-201ENST00000507326 574 ntBASIC2.9□□□□□ -1.95
SOX3P41225 GMPSP1-201ENST00000514075 579 ntBASIC2.9□□□□□ -1.95
SOX3P41225 RNU6-405P-201ENST00000516637 110 ntBASIC2.9□□□□□ -1.95
SOX3P41225 RNA5SP337-201ENST00000517007 109 ntBASIC2.9□□□□□ -1.95
SOX3P41225 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SOX3P41225 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 MIR3913-1-201ENST00000577744 102 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.9□□□□□ -1.95
SOX3P41225 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 AC106900.2-201ENST00000604994 317 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC005000.2-201ENST00000605468 310 ntBASIC2.9□□□□□ -1.95
SOX3P41225 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 AC008498.1-201ENST00000613012 531 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC013476.2-201ENST00000614456 459 ntBASIC2.9□□□□□ -1.95
SOX3P41225 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.9□□□□□ -1.95
SOX3P41225 SNHG22-203ENST00000617833 660 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC006338.1-201ENST00000618453 749 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC099506.2-201ENST00000623074 221 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SOX3P41225 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SOX3P41225 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.9□□□□□ -1.95
SOX3P41225 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SOX3P41225 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SOX3P41225 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SOX3P41225 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 RNU6-511P-201ENST00000363496 107 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RNU6-1284P-201ENST00000363701 100 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RNU4-75P-201ENST00000364621 146 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RNU1-39P-201ENST00000383897 165 ntBASIC2.89□□□□□ -1.95
SOX3P41225 SNORA48.5-201ENST00000391143 135 ntBASIC2.89□□□□□ -1.95
SOX3P41225 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SOX3P41225 RNU6-195P-201ENST00000411352 109 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC127391.1-201ENST00000411737 98 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
SOX3P41225 AC137499.1-201ENST00000427602 88 ntBASIC2.89□□□□□ -1.95
SOX3P41225 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.89□□□□□ -1.95
SOX3P41225 GAPDHP27-201ENST00000447427 1020 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RN7SKP298-201ENST00000515950 94 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RNU1-61P-201ENST00000516107 151 ntBASIC2.89□□□□□ -1.95
SOX3P41225 RNA5SP341-201ENST00000516261 117 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.89□□□□□ -1.95
SOX3P41225 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.89□□□□□ -1.95
SOX3P41225 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.89□□□□□ -1.95
SOX3P41225 AC055876.1-202ENST00000567053 138 ntBASIC2.89□□□□□ -1.95
SOX3P41225 MTND1P15-201ENST00000579262 949 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 MIR4325-201ENST00000583049 90 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.89□□□□□ -1.95
SOX3P41225 AP000860.1-201ENST00000605250 559 ntBASIC2.89□□□□□ -1.95
SOX3P41225 NDUFA8P1-201ENST00000605525 367 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC098614.4-201ENST00000607601 462 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.89□□□□□ -1.95
SOX3P41225 AL133173.2-201ENST00000614270 90 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AL110115.1-201ENST00000614396 364 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AL162274.2-201ENST00000614406 332 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC091834.1-201ENST00000614543 472 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC010133.1-201ENST00000615809 842 ntBASIC2.89□□□□□ -1.95
SOX3P41225 AC072046.2-201ENST00000618366 268 ntBASIC2.89□□□□□ -1.95
SOX3P41225 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SOX3P41225 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.89□□□□□ -1.95
SOX3P41225 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
SOX3P41225 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SOX3P41225 MIR422A-201ENST00000362286 90 ntBASIC2.88□□□□□ -1.95
SOX3P41225 RNU6-525P-201ENST00000363685 104 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AL359634.1-202ENST00000404721 284 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AP000567.1-201ENST00000406413 156 ntBASIC2.88□□□□□ -1.95
SOX3P41225 Z92545.1-201ENST00000411782 234 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.88□□□□□ -1.95
SOX3P41225 MTND3P17-201ENST00000416968 344 ntBASIC2.88□□□□□ -1.95
SOX3P41225 BX295541.1-201ENST00000417774 250 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.88□□□□□ -1.95
SOX3P41225 NDUFB4P7-201ENST00000423198 363 ntBASIC2.88□□□□□ -1.95
SOX3P41225 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.88□□□□□ -1.95
SOX3P41225 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.88□□□□□ -1.95
SOX3P41225 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.88□□□□□ -1.95
SOX3P41225 AL136380.1-201ENST00000447970 162 ntBASIC2.88□□□□□ -1.95
SOX3P41225 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.88□□□□□ -1.95
SOX3P41225 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.88□□□□□ -1.95
SOX3P41225 RPS20P20-201ENST00000460498 340 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AL049714.1-201ENST00000466686 347 ntBASIC2.88□□□□□ -1.95
SOX3P41225 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.88□□□□□ -1.95
SOX3P41225 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.88□□□□□ -1.95
SOX3P41225 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.88□□□□□ -1.95
SOX3P41225 AC010265.1-201ENST00000513509 211 ntBASIC2.88□□□□□ -1.95
SOX3P41225 Vault.3-201ENST00000516676 95 ntBASIC2.88□□□□□ -1.95
SOX3P41225 RNU6-840P-201ENST00000517275 65 ntBASIC2.88□□□□□ -1.95
SOX3P41225 MTCO2P4-201ENST00000517968 247 ntBASIC2.88□□□□□ -1.95
SOX3P41225 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.88□□□□□ -1.95
SOX3P41225 FAM60DP-201ENST00000524174 632 ntBASIC2.88□□□□□ -1.95
SOX3P41225 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 AC011979.2-201ENST00000527568 352 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AC093012.1-202ENST00000549403 582 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms