Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-201P-201ENST00000517100 61 ntBASIC2.58□□□□□ -2
SDC1P18827 AC025881.1-201ENST00000518851 512 ntBASIC2.58□□□□□ -2
SDC1P18827 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.58□□□□□ -2
SDC1P18827 AC100870.1-201ENST00000522035 505 ntBASIC2.58□□□□□ -2
SDC1P18827 AC022080.3-201ENST00000544433 482 ntBASIC2.58□□□□□ -2
SDC1P18827 AC109446.2-201ENST00000567872 497 ntBASIC2.58□□□□□ -2
SDC1P18827 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.58□□□□□ -2
SDC1P18827 ROCK1P1-201ENST00000573767 549 ntBASIC2.58□□□□□ -2
SDC1P18827 MIR5697-201ENST00000578045 78 ntBASIC2.58□□□□□ -2
SDC1P18827 MIR5195-201ENST00000583555 115 ntBASIC2.58□□□□□ -2
SDC1P18827 GLUD1P4-201ENST00000590914 418 ntBASIC2.58□□□□□ -2
SDC1P18827 AC002545.1-201ENST00000592511 181 ntBASIC2.58□□□□□ -2
SDC1P18827 AL442067.2-201ENST00000614033 363 ntBASIC2.58□□□□□ -2
SDC1P18827 AL603755.1-201ENST00000619504 163 ntBASIC2.58□□□□□ -2
SDC1P18827 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.58□□□□□ -2
SDC1P18827 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.58□□□□□ -2
SDC1P18827 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.58□□□□□ -2
SDC1P18827 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
SDC1P18827 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SDC1P18827 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.58□□□□□ -2
SDC1P18827 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.57□□□□□ -2
SDC1P18827 MIR592-201ENST00000384959 97 ntBASIC2.57□□□□□ -2
SDC1P18827 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.57□□□□□ -2
SDC1P18827 AL049545.1-201ENST00000401856 572 ntBASIC2.57□□□□□ -2
SDC1P18827 AL138827.1-201ENST00000402666 306 ntBASIC2.57□□□□□ -2
SDC1P18827 RNU2-33P-201ENST00000410344 192 ntBASIC2.57□□□□□ -2
SDC1P18827 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 USP9YP13-201ENST00000417797 480 ntBASIC2.57□□□□□ -2
SDC1P18827 Z99497.1-201ENST00000421282 135 ntBASIC2.57□□□□□ -2
SDC1P18827 AL645937.1-202ENST00000421799 937 ntBASIC2.57□□□□□ -2
SDC1P18827 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.57□□□□□ -2
SDC1P18827 SAR1AP4-201ENST00000429225 591 ntBASIC2.57□□□□□ -2
SDC1P18827 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 RPL36AP6-201ENST00000435770 321 ntBASIC2.57□□□□□ -2
SDC1P18827 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 ST13P20-201ENST00000447996 1065 ntBASIC2.57□□□□□ -2
SDC1P18827 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 RPS27AP9-201ENST00000477681 438 ntBASIC2.57□□□□□ -2
SDC1P18827 AC109486.1-201ENST00000486833 374 ntBASIC2.57□□□□□ -2
SDC1P18827 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.57□□□□□ -2
SDC1P18827 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 RNU6-1282P-201ENST00000516735 96 ntBASIC2.57□□□□□ -2
SDC1P18827 RNU6-56P-201ENST00000516986 93 ntBASIC2.57□□□□□ -2
SDC1P18827 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 AC022616.6-201ENST00000520479 119 ntBASIC2.57□□□□□ -2
SDC1P18827 AC106038.2-201ENST00000520706 568 ntBASIC2.57□□□□□ -2
SDC1P18827 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.57□□□□□ -2
SDC1P18827 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.57□□□□□ -2
SDC1P18827 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 HMGB1P14-201ENST00000557424 591 ntBASIC2.57□□□□□ -2
SDC1P18827 HMGB1P6-201ENST00000569046 646 ntBASIC2.57□□□□□ -2
SDC1P18827 MIR3915-201ENST00000578518 97 ntBASIC2.57□□□□□ -2
SDC1P18827 MIR3146-201ENST00000580367 79 ntBASIC2.57□□□□□ -2
SDC1P18827 DPPA3P3-201ENST00000603842 430 ntBASIC2.57□□□□□ -2
SDC1P18827 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.57□□□□□ -2
SDC1P18827 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 AL359198.2-201ENST00000611836 194 ntBASIC2.57□□□□□ -2
SDC1P18827 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.57□□□□□ -2
SDC1P18827 SNHG22-203ENST00000617833 660 ntBASIC2.57□□□□□ -2
SDC1P18827 AC007494.3-201ENST00000624660 743 ntBASIC2.57□□□□□ -2
SDC1P18827 AC019226.2-201ENST00000625973 424 ntBASIC2.57□□□□□ -2
SDC1P18827 MTND1P37-201ENST00000636562 264 ntBASIC2.57□□□□□ -2
SDC1P18827 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.57□□□□□ -2
SDC1P18827 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.57□□□□□ -2
SDC1P18827 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.56□□□□□ -2
SDC1P18827 AC233263.6-201ENST00000631132 1963 ntBASIC2.56□□□□□ -2
SDC1P18827 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
SDC1P18827 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
SDC1P18827 RNU5F-7P-201ENST00000363696 115 ntBASIC2.56□□□□□ -2
SDC1P18827 SNORD46.1-201ENST00000364139 104 ntBASIC2.56□□□□□ -2
SDC1P18827 RNU1-112P-201ENST00000364401 164 ntBASIC2.56□□□□□ -2
SDC1P18827 SNORD21-201ENST00000383953 95 ntBASIC2.56□□□□□ -2
SDC1P18827 RNU6-1035P-201ENST00000384477 107 ntBASIC2.56□□□□□ -2
SDC1P18827 SNORA44-201ENST00000384584 132 ntBASIC2.56□□□□□ -2
SDC1P18827 RPL21P75-201ENST00000396599 483 ntBASIC2.56□□□□□ -2
SDC1P18827 RPL21P28-201ENST00000401418 483 ntBASIC2.56□□□□□ -2
SDC1P18827 AL592114.1-201ENST00000403842 483 ntBASIC2.56□□□□□ -2
SDC1P18827 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.56□□□□□ -2
SDC1P18827 AC092047.1-201ENST00000424997 240 ntBASIC2.56□□□□□ -2
SDC1P18827 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.56□□□□□ -2
SDC1P18827 RPL22P17-201ENST00000438729 315 ntBASIC2.56□□□□□ -2
SDC1P18827 AL135938.1-201ENST00000443141 297 ntBASIC2.56□□□□□ -2
SDC1P18827 AL590365.1-201ENST00000450788 243 ntBASIC2.56□□□□□ -2
SDC1P18827 AC108059.3-201ENST00000456388 214 ntBASIC2.56□□□□□ -2
SDC1P18827 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.56□□□□□ -2
SDC1P18827 snoU13.28-201ENST00000459235 104 ntBASIC2.56□□□□□ -2
SDC1P18827 RPL21P39-201ENST00000463605 483 ntBASIC2.56□□□□□ -2
SDC1P18827 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.56□□□□□ -2
SDC1P18827 AP000797.1-201ENST00000478870 387 ntBASIC2.56□□□□□ -2
SDC1P18827 RPL21P93-201ENST00000480465 489 ntBASIC2.56□□□□□ -2
SDC1P18827 AC233702.1-201ENST00000482905 502 ntBASIC2.56□□□□□ -2
SDC1P18827 AC087190.1-201ENST00000484462 480 ntBASIC2.56□□□□□ -2
SDC1P18827 AC093591.1-201ENST00000491435 481 ntBASIC2.56□□□□□ -2
SDC1P18827 RPL21P16-201ENST00000495531 483 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms