| PTPN2 | P17706 | GABRG2-215 | ENST00000639213 | 9960 nt | TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | AC007496.3-201 | ENST00000624987 | 3443 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | AC006504.1-201 | ENST00000562493 | 3666 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | GTPBP8-205 | ENST00000473129 | 1518 nt | TSL 2 BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | CUL1P1-201 | ENST00000509510 | 2425 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | MUC15-205 | ENST00000529533 | 2084 nt | TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| PTPN2 | P17706 | MTND5P27-201 | ENST00000428871 | 1720 nt | BASIC | 3.53 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC090740.1-201 | ENST00000623193 | 2262 nt | BASIC | 3.53 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AGTR1-208 | ENST00000475347 | 1669 nt | APPRIS P1 TSL 3 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | PPIP5K2-203 | ENST00000414217 | 5842 nt | APPRIS P3 TSL 1 (best) BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | TET2-204 | ENST00000413648 | 4973 nt | TSL 1 (best) BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | YWHAZ-211 | ENST00000457309 | 3007 nt | APPRIS P1 TSL 2 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | CEP170-202 | ENST00000366542 | 6828 nt | APPRIS P1 TSL 5 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | PP2D1-202 | ENST00000389050 | 2151 nt | APPRIS P1 TSL 5 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | STAP1-202 | ENST00000396225 | 1146 nt | APPRIS P1 TSL 1 (best) BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | GSTA9P-201 | ENST00000406231 | 611 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC239803.1-203 | ENST00000411978 | 452 nt | TSL 2 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC137499.1-201 | ENST00000427602 | 88 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC133104.1-201 | ENST00000429100 | 218 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | PCDH9-AS1-201 | ENST00000430861 | 532 nt | TSL 2 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | HIGD1AP11-201 | ENST00000438361 | 280 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MTCO3P45-201 | ENST00000443036 | 613 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC025428.1-201 | ENST00000444137 | 403 nt | TSL 3 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL671855.1-201 | ENST00000446875 | 1203 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | LINC01758-201 | ENST00000448001 | 458 nt | TSL 3 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC007953.1-201 | ENST00000450500 | 560 nt | TSL 4 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL390961.3-201 | ENST00000458171 | 485 nt | TSL 5 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | SRRM1P2-201 | ENST00000464531 | 1192 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MTCO2P29-201 | ENST00000465212 | 189 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RPL9P6-201 | ENST00000492764 | 598 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC091133.4-201 | ENST00000511142 | 308 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC010265.1-201 | ENST00000513509 | 211 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU6-711P-201 | ENST00000517255 | 106 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC136777.1-201 | ENST00000517765 | 369 nt | TSL 4 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | OR4H12P-201 | ENST00000556269 | 907 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MED28P6-201 | ENST00000558776 | 231 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC079203.2-201 | ENST00000559867 | 387 nt | TSL 2 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC106782.4-201 | ENST00000568264 | 210 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MIR4325-201 | ENST00000583049 | 90 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MIR4293-201 | ENST00000584305 | 78 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC067852.3-201 | ENST00000589177 | 561 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC022150.3-201 | ENST00000599143 | 880 nt | TSL 5 BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC103710.2-201 | ENST00000609912 | 942 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC004696.1-201 | ENST00000614345 | 607 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL158209.2-201 | ENST00000619266 | 216 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC005550.3-201 | ENST00000451240 | 3743 nt | TSL 1 (best) BASIC | 3.52 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | LPP-220 | ENST00000617246 | 18220 nt | APPRIS P1 TSL 1 (best) BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AGTR1-206 | ENST00000474935 | 1795 nt | APPRIS P1 TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | OR9G4-204 | ENST00000641668 | 2608 nt | APPRIS P1 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNA5SP374-201 | ENST00000362939 | 125 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU6-181P-201 | ENST00000363225 | 107 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | U3.11-201 | ENST00000364476 | 212 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU6-169P-201 | ENST00000365336 | 107 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU6-805P-201 | ENST00000365643 | 106 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU1-101P-201 | ENST00000391171 | 127 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL357075.1-201 | ENST00000404107 | 726 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | TXNP7-201 | ENST00000406296 | 293 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC005162.2-201 | ENST00000411479 | 578 nt | TSL 4 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL078645.1-201 | ENST00000414377 | 423 nt | TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL353678.1-201 | ENST00000422735 | 741 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RPL27AP8-201 | ENST00000424277 | 446 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL357552.1-201 | ENST00000445254 | 415 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MTND1P1-201 | ENST00000445453 | 368 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | NDUFAF4P4-201 | ENST00000454883 | 502 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC092422.1-201 | ENST00000455576 | 584 nt | TSL 4 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC010631.1-201 | ENST00000474150 | 156 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC034226.1-201 | ENST00000506429 | 487 nt | TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU6-445P-201 | ENST00000516949 | 107 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC011979.2-201 | ENST00000527568 | 352 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC008083.3-201 | ENST00000547777 | 329 nt | TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC128657.1-201 | ENST00000549459 | 145 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | ARL2BPP2-201 | ENST00000550907 | 489 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | LINC02311-202 | ENST00000556819 | 477 nt | TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC020978.4-201 | ENST00000569088 | 460 nt | TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC010546.1-201 | ENST00000569391 | 485 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL022154.1-201 | ENST00000604698 | 785 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC106900.2-201 | ENST00000604994 | 317 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL356321.1-201 | ENST00000621360 | 228 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | C17orf112-201 | ENST00000623702 | 835 nt | TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RASA1-202 | ENST00000456692 | 3776 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | ADAM5-201 | ENST00000359790 | 1663 nt | TSL 1 (best) BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AL353743.1-202 | ENST00000431724 | 1695 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | ZNF883-201 | ENST00000619044 | 2051 nt | APPRIS P1 TSL 5 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNF17-204 | ENST00000339524 | 2203 nt | TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | SCOC-202 | ENST00000394201 | 1795 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.51 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | KCNH7-204 | ENST00000618399 | 3713 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | FIGNL1-212 | ENST00000613602 | 3187 nt | APPRIS P1 TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | MS4A1-212 | ENST00000534668 | 3475 nt | APPRIS P1 TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | KCNE2-201 | ENST00000290310 | 1051 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU5A-1-201 | ENST00000362698 | 116 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | SNORD56.2-201 | ENST00000363242 | 71 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNA5SP197-201 | ENST00000363357 | 119 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AKAP14-202 | ENST00000371422 | 412 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC110754.1-201 | ENST00000399740 | 601 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC009480.1-201 | ENST00000402410 | 412 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | RNU2-36P-201 | ENST00000410361 | 191 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | TMEM167AP1-201 | ENST00000423409 | 219 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC012498.1-201 | ENST00000424037 | 437 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | LINC01037-201 | ENST00000427337 | 424 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| PTPN2 | P17706 | AC008850.1-201 | ENST00000427546 | 362 nt | BASIC | 3.5 | □□□□□ -1.85 | | |