Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC026784.1-201ENST00000507986 352 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 VTRNA2-2P-201ENST00000516091 103 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 SNORA31.18-201ENST00000517043 134 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 SNORA31.19-201ENST00000517079 126 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 SCARNA11.3-201ENST00000517276 130 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC009902.1-201ENST00000519351 183 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HMGB1P09429 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HMGB1P09429 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.22□□□□□ -1.73
HMGB1P09429 NCAPGP2-201ENST00000557911 754 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HMGB1P09429 AC137800.2-201ENST00000574375 120 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.22□□□□□ -1.73
HMGB1P09429 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HMGB1P09429 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
HMGB1P09429 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HMGB1P09429 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HMGB1P09429 SNORD9-201ENST00000362566 104 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 RNA5SP479-201ENST00000364858 117 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
HMGB1P09429 AF228730.1-201ENST00000397972 663 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL445189.1-201ENST00000405722 338 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 RNU2-39P-201ENST00000410604 198 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 RNU6-195P-201ENST00000411352 109 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AC080125.1-201ENST00000414888 684 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL035423.1-201ENST00000420331 213 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL591704.1-201ENST00000432574 275 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL445687.1-201ENST00000439946 251 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.21□□□□□ -1.74
HMGB1P09429 snoU109.1-201ENST00000459339 135 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AC010468.1-201ENST00000461022 817 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 MTCO2P6-201ENST00000463134 685 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.21□□□□□ -1.74
HMGB1P09429 AC022616.3-201ENST00000523940 148 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL589743.7-201ENST00000612637 233 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AC078883.4-201ENST00000623218 367 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 AL392088.2-201ENST00000637607 285 ntBASIC4.21□□□□□ -1.74
HMGB1P09429 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HMGB1P09429 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
HMGB1P09429 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
HMGB1P09429 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HMGB1P09429 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 RNU6-1083P-201ENST00000384022 107 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 RNU6-19P-201ENST00000384718 107 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 MIR147B-201ENST00000390185 80 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL136116.1-201ENST00000403591 381 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 USP9YP6-201ENST00000413550 854 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC068533.1-201ENST00000418542 415 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC4.2□□□□□ -1.74
HMGB1P09429 ISCA1P6-201ENST00000427740 390 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGB1P09429 PGBD4P3-201ENST00000440731 581 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 NANOGNBP1-201ENST00000448444 480 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 NIPA2P5-201ENST00000452282 464 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL033528.1-201ENST00000453780 140 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.2□□□□□ -1.74
HMGB1P09429 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGB1P09429 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HMGB1P09429 RAP1BP2-201ENST00000478270 544 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC026801.1-201ENST00000497178 464 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC108078.2-201ENST00000510750 236 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 MTND4LP31-201ENST00000514859 294 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 RNU6-1220P-201ENST00000517126 108 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 BTF3P12-201ENST00000519620 469 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 AC026333.2-201ENST00000542164 106 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL157871.3-201ENST00000557231 293 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 MIR3682-201ENST00000581338 84 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 AL391813.1-201ENST00000603098 260 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC007938.3-201ENST00000604965 623 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL451064.1-201ENST00000607718 471 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL359547.2-201ENST00000615810 418 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AL603839.4-201ENST00000624658 1005 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 AC119674.1-207ENST00000641355 633 ntBASIC4.2□□□□□ -1.74
HMGB1P09429 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGB1P09429 U8.3-201ENST00000363321 132 ntBASIC4.19□□□□□ -1.74
HMGB1P09429 RNU2-25P-201ENST00000411041 191 ntBASIC4.19□□□□□ -1.74
HMGB1P09429 RPL19P1-201ENST00000411635 428 ntBASIC4.19□□□□□ -1.74
HMGB1P09429 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.19□□□□□ -1.74
HMGB1P09429 OR51A5P-201ENST00000415429 942 ntBASIC4.19□□□□□ -1.74
HMGB1P09429 AL109913.1-201ENST00000421173 514 ntBASIC4.19□□□□□ -1.74
HMGB1P09429 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGB1P09429 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGB1P09429 CETN4P-201ENST00000432407 469 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms