Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-1315P-201ENST00000517187 99 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 MIR4790-201ENST00000577799 79 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC012119.1-201ENST00000603184 222 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AL161798.1-201ENST00000604630 131 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AL050343.2-201ENST00000607338 280 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 DUSP12P1-201ENST00000612874 516 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC114781.5-201ENST00000615297 108 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RMST_9.1-201ENST00000619945 193 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.245-201ENST00000364493 95 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP22-201ENST00000365393 109 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RNU6-128P-201ENST00000383976 107 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP239-201ENST00000410218 129 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RN7SKP263-201ENST00000411194 309 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RAB28P1-201ENST00000411517 641 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 VN1R36P-201ENST00000414936 291 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RPL21P90-201ENST00000415692 466 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RAC1P3-201ENST00000416129 580 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC016831.2-201ENST00000417179 352 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 SNAP23P1-201ENST00000433229 246 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RPL23AP52-201ENST00000439311 478 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RN7SL41P-201ENST00000476144 297 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC026979.1-201ENST00000492525 396 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP468-201ENST00000516782 93 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP290-201ENST00000517133 127 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC069113.1-201ENST00000517763 267 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AL352979.3-201ENST00000553515 247 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC007151.1-201ENST00000572774 483 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC053481.4-201ENST00000583164 216 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 AC135507.2-201ENST00000612443 309 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 MIR6758-201ENST00000620653 63 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 MARK2P15-201ENST00000432204 2186 ntBASIC4.29□□□□□ -1.72
TRIM39Q9HCM9 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL158163.1-201ENST00000603915 1649 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RN7SKP44-201ENST00000363602 316 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU6-371P-201ENST00000364283 108 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU1-132P-201ENST00000364300 164 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP366-201ENST00000365454 123 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU6-395P-201ENST00000365662 106 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU6-1297P-201ENST00000384415 104 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL139397.2-201ENST00000404529 772 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 Z85995.1-201ENST00000415547 335 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 MTCO2P27-201ENST00000420740 428 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC007919.1-201ENST00000429380 217 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 GPM6BP2-201ENST00000432046 144 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 GPM6BP1-201ENST00000446387 144 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.632-201ENST00000459189 102 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 HMGB1P30-201ENST00000492455 606 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP154-201ENST00000516193 111 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU2-58P-201ENST00000516403 183 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNU6-1069P-201ENST00000516612 133 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 SNORA25.17-201ENST00000517184 124 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP454-201ENST00000517231 127 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 TRAV8-5-201ENST00000537369 341 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC004024.1-201ENST00000549244 247 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL442663.2-201ENST00000554385 511 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 MIR1273C-201ENST00000578669 77 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 MIR3138-201ENST00000585238 82 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC023043.2-201ENST00000589678 1026 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC008638.3-201ENST00000603341 463 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC007742.2-201ENST00000618226 398 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 PNPT1P2-201ENST00000456768 2050 ntBASIC4.28□□□□□ -1.72
TRIM39Q9HCM9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms