Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL513331.1-201ENST00000411908 397 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 OR51A5P-201ENST00000415429 942 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 AL606489.2-201ENST00000433886 234 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.18□□□□□ -1.74
NUP88Q99567 RPL7P28-201ENST00000437739 740 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 MTND4P25-201ENST00000441039 533 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 DDX3P2-201ENST00000446138 111 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 RNU7-182P-201ENST00000459009 62 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 MRPS17P3-201ENST00000465453 385 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 RNA5SP309-201ENST00000516670 106 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 RN7SKP258-201ENST00000517151 304 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.18□□□□□ -1.74
NUP88Q99567 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 MTND1P35-201ENST00000526739 508 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.18□□□□□ -1.74
NUP88Q99567 AC104383.1-201ENST00000530297 370 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.18□□□□□ -1.74
NUP88Q99567 AL133241.1-201ENST00000556832 487 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AL158032.1-201ENST00000605401 106 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC007619.2-201ENST00000605743 379 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC007014.2-201ENST00000615581 479 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AL354950.2-201ENST00000617939 290 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC007998.5-201ENST00000622938 237 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC025034.2-201ENST00000623264 286 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AC093648.1-201ENST00000623546 606 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 MIR3688-2-201ENST00000636963 87 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.18□□□□□ -1.74
NUP88Q99567 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
NUP88Q99567 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.17□□□□□ -1.74
NUP88Q99567 AL672296.1-201ENST00000427780 2158 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
NUP88Q99567 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
NUP88Q99567 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.17□□□□□ -1.74
NUP88Q99567 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NUP88Q99567 RNU6-288P-201ENST00000363690 104 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 RNU6-190P-201ENST00000384154 102 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 SNORA24.1-201ENST00000384401 135 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 RNU6-606P-201ENST00000384721 111 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 PTMAP5-201ENST00000393073 333 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NUP88Q99567 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.17□□□□□ -1.74
NUP88Q99567 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NUP88Q99567 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC097713.2-201ENST00000430199 356 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 RPL36AP6-201ENST00000435770 321 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 HMGB1P12-201ENST00000438594 598 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NUP88Q99567 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.17□□□□□ -1.74
NUP88Q99567 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.17□□□□□ -1.74
NUP88Q99567 FDX1P2-201ENST00000450769 375 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AC003071.1-201ENST00000451219 789 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.17□□□□□ -1.74
NUP88Q99567 SNORD27.1-201ENST00000516319 72 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 RNA5SP503-201ENST00000517047 117 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AP006587.4-201ENST00000526053 529 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.17□□□□□ -1.74
NUP88Q99567 AL157687.1-201ENST00000554853 619 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC092325.1-201ENST00000566449 554 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AC068135.2-201ENST00000569293 1028 ntBASIC4.17□□□□□ -1.74
NUP88Q99567 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.17□□□□□ -1.74
NUP88Q99567 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.17□□□□□ -1.74
NUP88Q99567 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NUP88Q99567 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
NUP88Q99567 RNU4-35P-201ENST00000362588 141 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RNY4P14-201ENST00000363656 96 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RNA5SP50-201ENST00000363731 107 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RNA5SP72-201ENST00000364442 117 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 SNORD37.1-201ENST00000390968 65 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 MIR1277-201ENST00000408536 78 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RNU2-37P-201ENST00000410695 177 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC017079.2-201ENST00000416102 485 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.16□□□□□ -1.74
NUP88Q99567 BX842559.1-201ENST00000419615 532 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.16□□□□□ -1.74
NUP88Q99567 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 RNU6-420P-201ENST00000458780 107 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms