Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC133485.1-201ENST00000567176 124 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC138907.6-201ENST00000568401 126 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC243829.6-201ENST00000612652 106 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AL031601.2-202ENST00000622650 282 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 Z95118.1-201ENST00000421372 247 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 UBE2FP3-201ENST00000436366 524 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 GPM6BP3-201ENST00000442797 145 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC023141.11-201ENST00000508864 202 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 CASP1P1-201ENST00000526345 212 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC005786.1-201ENST00000588553 154 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 FAM157A-202ENST00000615155 405 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.29
VPS13AQ96RL7 RNA5SP276-201ENST00000362580 94 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 SNORA62.1-201ENST00000364287 154 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 RPL23AP32-201ENST00000395315 459 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 AC004022.2-201ENST00000413824 193 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 USP12PX-201ENST00000432383 1057 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 MIR203B-201ENST00000636080 86 ntBASIC0.78□□□□□ -2.29
VPS13AQ96RL7 Y_RNA.488-201ENST00000384403 102 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 BOLA3P3-201ENST00000505182 232 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 MIR4802-201ENST00000581881 80 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 HSPE1P14-201ENST00000605812 302 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC103810.9-201ENST00000606688 112 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 SNORA23-201ENST00000365128 182 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 Y_RNA.571-201ENST00000384753 98 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 LSM1P1-201ENST00000438629 273 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 GOLGA5P1-201ENST00000507317 980 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC079148.1-201ENST00000565944 819 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 AC068787.1-201ENST00000623908 691 ntBASIC0.77□□□□□ -2.29
VPS13AQ96RL7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC0.77□□□□□ -2.29
VPS13AQ96RL7 SNORD114-2-201ENST00000363953 78 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.76□□□□□ -2.29
VPS13AQ96RL7 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 AC091304.6-201ENST00000619761 202 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
VPS13AQ96RL7 SNORA31.20-201ENST00000517111 133 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 AP001180.3-201ENST00000582221 145 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 AC013244.2-201ENST00000603396 103 ntBASIC0.76□□□□□ -2.29
VPS13AQ96RL7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
VPS13AQ96RL7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.76□□□□□ -2.29
VPS13AQ96RL7 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
VPS13AQ96RL7 U8.3-201ENST00000363321 132 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC067863.3-201ENST00000624172 122 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 RNU6-942P-201ENST00000363002 107 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 RNU6-173P-201ENST00000364215 104 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 BX682237.1-201ENST00000415016 335 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 Z99497.1-201ENST00000421282 135 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 HMGB1P9-201ENST00000429856 646 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC121161.1-201ENST00000510606 652 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 HMGN1P30-201ENST00000589286 268 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 RNA5SP295-201ENST00000362655 121 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 SNORA67.1-201ENST00000364749 141 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC092745.2-202ENST00000411880 369 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 SDCBPP1-201ENST00000440192 890 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC104308.1-201ENST00000454621 333 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 C2orf27A-204ENST00000623058 969 ntBASIC0.75□□□□□ -2.29
VPS13AQ96RL7 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
VPS13AQ96RL7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC0.74□□□□□ -2.29
VPS13AQ96RL7 AL031663.1-201ENST00000437445 219 ntBASIC0.74□□□□□ -2.29
VPS13AQ96RL7 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.74□□□□□ -2.29
VPS13AQ96RL7 AC104997.1-201ENST00000519761 717 ntBASIC0.74□□□□□ -2.29
VPS13AQ96RL7 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.74□□□□□ -2.29
VPS13AQ96RL7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
VPS13AQ96RL7 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.74□□□□□ -2.29
VPS13AQ96RL7 RPS27P21-201ENST00000486977 252 ntBASIC0.74□□□□□ -2.29
VPS13AQ96RL7 AC096745.1-201ENST00000509945 370 ntBASIC0.74□□□□□ -2.29
VPS13AQ96RL7 ZNF192P1-203ENST00000565888 810 ntBASIC0.74□□□□□ -2.29
VPS13AQ96RL7 Y_RNA.142-201ENST00000363491 102 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 RNU6-955P-201ENST00000410497 104 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 AC104692.1-201ENST00000472406 90 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 AC022880.1-201ENST00000534017 973 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 RNU2-41P-201ENST00000410991 178 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 HSPE1P24-201ENST00000450782 238 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 RPS20P20-201ENST00000460498 340 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 MIR5194-201ENST00000582634 120 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms