Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC100793.4-201ENST00000613683 429 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AL392048.1-201ENST00000613946 534 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AC091304.6-201ENST00000619761 202 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AL356266.1-201ENST00000623311 483 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AC120349.3-201ENST00000624377 529 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AC093591.3-201ENST00000634516 308 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 AL137003.2-201ENST00000606924 2538 ntBASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
RPUSD4Q96CM3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL445523.1-201ENST00000451184 1362 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RNU1-35P-201ENST00000362782 153 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 SNORA7.4-201ENST00000384249 137 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 SNORD67-201ENST00000390833 111 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 Y_RNA.608-201ENST00000410647 95 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RNU4-47P-201ENST00000410876 114 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RNU6-920P-201ENST00000410926 92 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC244035.1-201ENST00000430042 390 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC129850.1-201ENST00000436203 508 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL445567.1-201ENST00000439121 144 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL714022.1-201ENST00000439897 151 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 MTND1P12-201ENST00000455231 147 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC116337.2-201ENST00000477662 156 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RPL37P25-201ENST00000507308 276 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 RN7SKP272-201ENST00000516988 232 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 DUXAP2-201ENST00000519198 589 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AP000867.2-201ENST00000532468 320 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 MRPS36P5-201ENST00000551909 298 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC007318.2-201ENST00000620999 243 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC018692.3-201ENST00000623929 123 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 AC008669.1-201ENST00000565823 2178 ntBASIC2.29□□□□□ -2.04
RPUSD4Q96CM3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 MIR449B-201ENST00000384995 97 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL365496.1-201ENST00000426885 215 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC073901.1-201ENST00000462471 408 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 FAM133DP-201ENST00000464802 691 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AP000797.1-201ENST00000478870 387 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 MTND5P13-201ENST00000513046 1079 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 RNA5SP367-201ENST00000516557 118 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 RNA5SP291-201ENST00000517222 105 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 ZNF519P3-201ENST00000557158 1032 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 MIR5697-201ENST00000578045 78 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 UBL5P2-201ENST00000583788 219 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 RPL23AP78-201ENST00000599928 470 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC079089.3-201ENST00000603094 673 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC136601.2-201ENST00000604356 474 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL359999.1-201ENST00000604513 294 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL109618.2-201ENST00000605527 211 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC108747.1-201ENST00000609508 535 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AC019226.2-201ENST00000625973 424 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 AL359693.1-201ENST00000614959 2407 ntBASIC2.28□□□□□ -2.04
RPUSD4Q96CM3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 AC026241.1-201ENST00000517873 2142 ntBASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 RNU6-511P-201ENST00000363496 107 ntBASIC2.27□□□□□ -2.05
RPUSD4Q96CM3 MIR512-1-201ENST00000384913 84 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms