Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 PCMTD1P7-201ENST00000634506 357 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC007671.2-201ENST00000637344 619 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL359693.1-201ENST00000614959 2407 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 RNU6-198P-201ENST00000384258 104 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 MIR144-201ENST00000384886 86 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 TAS2R15P-201ENST00000390674 928 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP354-201ENST00000391247 136 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 SNORA48.7-201ENST00000391302 135 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AL359704.1-201ENST00000411586 781 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC007064.1-201ENST00000412238 351 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AL451054.2-201ENST00000420896 202 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC092047.1-201ENST00000424997 240 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AL035407.1-201ENST00000429211 571 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC093156.1-201ENST00000440382 670 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 WASF1P1-201ENST00000447560 1131 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 PAXBP1P1-201ENST00000449315 447 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 RPL23AP35-201ENST00000451906 501 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 HIGD1AP13-201ENST00000509878 289 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 HMGB3P3-201ENST00000510526 400 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC090136.1-201ENST00000520009 240 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AP004247.1-201ENST00000531556 1289 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC124947.2-202ENST00000552735 133 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC009094.1-201ENST00000564443 426 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 MIR4307-201ENST00000582802 84 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 MIR5195-201ENST00000583555 115 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC005832.2-201ENST00000538921 1430 ntBASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC54Q8NEL0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC007785.2-201ENST00000598627 1916 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 DEFA7P-201ENST00000382676 285 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 MIR1305-201ENST00000408300 86 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 MTND1P21-201ENST00000412991 285 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 UBE2FP1-201ENST00000416536 447 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL365496.1-201ENST00000426885 215 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC011816.1-201ENST00000441346 546 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RPS24P13-201ENST00000442520 397 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL121871.1-201ENST00000443413 436 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RPL7P36-201ENST00000444633 681 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 CBWD4P-201ENST00000445695 655 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 MTND1P9-201ENST00000453775 944 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 snoU13.28-201ENST00000459235 104 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 MTND2P14-201ENST00000482139 351 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RPS27P26-201ENST00000494583 239 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP282-201ENST00000516355 108 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP82-201ENST00000516707 92 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC022080.3-201ENST00000544433 482 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC010546.1-201ENST00000569391 485 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 OR1M4P-201ENST00000589199 287 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 BNIP3P23-201ENST00000599655 511 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AP000403.1-201ENST00000603349 851 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC004987.4-201ENST00000603383 338 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC105148.1-201ENST00000604961 409 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC107214.2-201ENST00000608204 634 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC093838.1-201ENST00000613014 469 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC009268.2-201ENST00000621925 457 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AP002782.1-201ENST00000623107 614 ntBASIC2.29□□□□□ -2.04
CCDC54Q8NEL0 AC068787.1-201ENST00000623908 691 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms