Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC087763.1-201ENST00000603391 286 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC004805.2-201ENST00000605382 482 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 SDR42E1P1-201ENST00000611327 477 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 MIR7702-201ENST00000621931 59 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AP003400.5-201ENST00000624827 617 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC100810.6-201ENST00000638068 285 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC007656.2-201ENST00000624902 4547 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 ZNF137P-201ENST00000456718 1920 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.33-201ENST00000362591 102 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 RNA5SP295-201ENST00000362655 121 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.72-201ENST00000362894 103 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.399-201ENST00000383955 105 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 RNU1-82P-201ENST00000390851 165 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Z98745.1-201ENST00000402553 494 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.604-201ENST00000410574 102 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC017079.2-201ENST00000416102 485 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AL513185.2-201ENST00000425543 193 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AL669831.1-202ENST00000428504 417 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 GTF2IP13-201ENST00000438487 386 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AL590664.1-201ENST00000448065 339 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AL500522.2-201ENST00000448562 343 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC006539.3-201ENST00000454258 129 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.654-201ENST00000497848 106 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC011602.1-201ENST00000546484 331 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 MIR4425-201ENST00000580572 84 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC020910.3-201ENST00000603701 874 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC008962.1-201ENST00000605729 304 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 AC092807.2-201ENST00000609367 243 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 U2.17-201ENST00000611454 95 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 OR52H1-202ENST00000641796 1061 ntBASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
CCDC28AQ8IWP9 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC005183.1-201ENST00000603687 1979 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC021146.4-201ENST00000309229 279 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 SNORA72.1-201ENST00000363485 129 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-371P-201ENST00000364283 108 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU1-106P-201ENST00000384382 164 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-45P-201ENST00000384471 107 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 SNORA16.2-201ENST00000390991 127 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL162578.1-201ENST00000406202 378 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-1025P-201ENST00000410629 104 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RPL12P3-201ENST00000440080 396 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RPS5P7-201ENST00000456664 608 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-1208P-201ENST00000459588 107 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RPL30P14-201ENST00000482744 348 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RPL32P34-201ENST00000486380 400 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC026979.1-201ENST00000492525 396 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC098799.2-201ENST00000509466 868 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC006445.2-201ENST00000510061 472 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 RNU2-69P-201ENST00000516061 100 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 OR11H5P-201ENST00000554039 926 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL118558.2-201ENST00000556294 238 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AMZ2P1-203ENST00000565833 850 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 FTX_3.1-201ENST00000610451 147 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 FAM27B-201ENST00000610601 213 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 DUSP12P1-201ENST00000612874 516 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC007546.1-201ENST00000619452 559 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 SNORD39.4-201ENST00000620099 78 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC099506.2-201ENST00000623074 221 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL445363.3-201ENST00000623080 671 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC022418.1-201ENST00000624118 445 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms