Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU5A-7P-201ENST00000515979 116 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 CR383656.7-201ENST00000548164 174 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 BPTFP1-201ENST00000579209 492 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC012254.4-201ENST00000588843 273 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC092474.3-201ENST00000603022 568 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AL163051.2-201ENST00000618976 735 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC111188.2-201ENST00000529697 1387 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 SNORD51-201ENST00000384320 80 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 RNU4-72P-201ENST00000410754 173 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL365496.1-201ENST00000426885 215 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 MTCO3P2-201ENST00000457365 171 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-420P-201ENST00000458780 107 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC008427.1-201ENST00000503102 655 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 MIR3616-201ENST00000584070 92 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC096586.1-201ENST00000610267 561 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC098679.5-201ENST00000624394 571 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL590396.2-201ENST00000636511 1041 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL596028.1-201ENST00000326971 197 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-444P-201ENST00000383988 108 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 MIR17-201ENST00000385012 84 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 SUMO2P12-201ENST00000405924 140 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC244453.4-201ENST00000419150 388 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 BEND7P1-201ENST00000422058 457 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC002542.1-201ENST00000440683 193 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 SNORD121B-201ENST00000458838 81 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 snoU109.4-201ENST00000458953 143 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC090096.1-201ENST00000489168 390 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 MTND3P24-201ENST00000506306 329 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 RN7SL622P-201ENST00000585292 275 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AP001330.4-201ENST00000604350 154 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 FRG1HP-204ENST00000617940 757 ntBASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC88AQ3V6T2 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 Y_RNA.493-201ENST00000384422 102 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 MIR525-201ENST00000384978 85 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 MIR517C-201ENST00000385103 95 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AL121978.1-201ENST00000402778 359 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 RNU2-40P-201ENST00000410833 196 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 Z75741.2-201ENST00000417272 1167 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 MTND4LP14-201ENST00000429447 288 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 MICF-203ENST00000432679 129 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AL354685.2-201ENST00000448218 1447 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 SUB1P1-201ENST00000524415 382 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC104229.1-201ENST00000561364 255 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 RPS15AP11-201ENST00000594193 385 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC012493.3-201ENST00000604494 112 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 AC112503.2-201ENST00000609005 552 ntBASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
CCDC88AQ3V6T2 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 RNA5SP258-201ENST00000362750 119 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 RNU4-51P-201ENST00000364206 140 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-339P-201ENST00000384310 107 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AL512637.2-201ENST00000431287 1256 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 GTF2IP7-202ENST00000436677 309 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC093281.2-201ENST00000510153 597 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC135279.1-201ENST00000543493 504 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC012414.2-201ENST00000559474 187 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 PVT1_3.1-201ENST00000620853 95 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 AL137003.2-201ENST00000606924 2538 ntBASIC1.84□□□□□ -2.11
CCDC88AQ3V6T2 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 AL355497.1-201ENST00000406262 551 ntBASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 GTF2IP12-201ENST00000456547 356 ntBASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms