Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC012150.2-201ENST00000621300 544 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 AL359697.1-201ENST00000624879 587 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A4P53420 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A4P53420 MIR6073-201ENST00000352083 89 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 RNU6-984P-201ENST00000363236 109 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 RNU6-353P-201ENST00000364266 108 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A4P53420 Y_RNA.554-201ENST00000384672 102 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 SNORA41-201ENST00000384675 132 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 SNORA80E-201ENST00000384744 137 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 USP9YP6-201ENST00000413550 854 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 TAF13P2-201ENST00000416876 286 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 ATG3P1-201ENST00000419507 911 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.51□□□□□ -2.01
COL4A4P53420 RPL7P30-201ENST00000420888 709 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.51□□□□□ -2.01
COL4A4P53420 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.51□□□□□ -2.01
COL4A4P53420 LARP1BP3-201ENST00000437229 869 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AL512286.1-201ENST00000439244 400 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC002542.1-201ENST00000440683 193 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 USP9YP34-201ENST00000453983 808 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.51□□□□□ -2.01
COL4A4P53420 RFC5P1-201ENST00000454419 874 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.51□□□□□ -2.01
COL4A4P53420 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.51□□□□□ -2.01
COL4A4P53420 AC109486.1-201ENST00000486833 374 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 RPL23AP49-201ENST00000492925 468 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC079382.1-201ENST00000493346 557 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 FAM92A1P2-202ENST00000504766 877 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC098799.2-201ENST00000509466 868 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC117522.1-201ENST00000509821 380 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.51□□□□□ -2.01
COL4A4P53420 AC025465.4-201ENST00000513422 638 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 RNU6-678P-201ENST00000516832 109 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC025881.1-201ENST00000518851 512 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC016957.1-201ENST00000534895 309 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.51□□□□□ -2.01
COL4A4P53420 AC074029.1-201ENST00000552531 1044 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AL117336.2-201ENST00000602435 335 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC005034.5-201ENST00000604219 466 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AP000860.1-201ENST00000605250 559 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC008945.2-201ENST00000606056 604 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC126118.1-201ENST00000607744 628 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC2.51□□□□□ -2.01
COL4A4P53420 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC006338.1-201ENST00000618453 749 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 MIR1291-201ENST00000627649 87 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC025048.6-202ENST00000627667 438 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 PCMTD1P7-201ENST00000634506 357 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC116618.1-201ENST00000634617 774 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A4P53420 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
COL4A4P53420 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
COL4A4P53420 AL606537.1-201ENST00000607258 2011 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A4P53420 MTND4P16-201ENST00000466108 1367 ntBASIC2.51□□□□□ -2.01
COL4A4P53420 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL4A4P53420 RNU4-21P-201ENST00000362802 126 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 SNORD65-201ENST00000391079 73 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 SNORA17.3-201ENST00000391159 129 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 RPS15AP38-201ENST00000413110 372 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.5□□□□□ -2.01
COL4A4P53420 RWDD4P2-201ENST00000426392 563 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 MED14P1-201ENST00000430517 648 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 NDUFA5P4-201ENST00000436704 385 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.5□□□□□ -2.01
COL4A4P53420 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A4P53420 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.5□□□□□ -2.01
COL4A4P53420 KLF3P2-201ENST00000465138 268 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC055855.1-201ENST00000489563 579 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC026436.1-201ENST00000510537 270 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC108120.2-201ENST00000512973 294 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.5□□□□□ -2.01
COL4A4P53420 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.5□□□□□ -2.01
COL4A4P53420 CENPUP1-201ENST00000526649 1202 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.5□□□□□ -2.01
COL4A4P53420 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.5□□□□□ -2.01
COL4A4P53420 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.5□□□□□ -2.01
COL4A4P53420 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
COL4A4P53420 AC092325.1-201ENST00000566449 554 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A4P53420 MIR5708-201ENST00000579723 85 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC090616.5-202ENST00000582111 297 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.5□□□□□ -2.01
COL4A4P53420 AC009994.1-201ENST00000606889 253 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC106028.5-201ENST00000610332 395 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 AC091304.9-201ENST00000612091 226 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 MIR7844-201ENST00000616161 122 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 DUXAP9-208ENST00000622815 614 ntBASIC2.5□□□□□ -2.01
COL4A4P53420 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.5□□□□□ -2.01
COL4A4P53420 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A4P53420 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A4P53420 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms