Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNF6P1-201ENST00000444889 1784 ntBASIC1.66□□□□□ -2.14
CUX1P39880 RNU6-1331P-201ENST00000363658 106 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.66□□□□□ -2.14
CUX1P39880 AC021382.1-201ENST00000483523 359 ntBASIC1.66□□□□□ -2.14
CUX1P39880 RPS23P4-201ENST00000487908 423 ntBASIC1.66□□□□□ -2.14
CUX1P39880 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.66□□□□□ -2.14
CUX1P39880 RNA5SP395-201ENST00000516567 118 ntBASIC1.66□□□□□ -2.14
CUX1P39880 RNA5SP468-201ENST00000516782 93 ntBASIC1.66□□□□□ -2.14
CUX1P39880 RNU6-1073P-201ENST00000517182 106 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.66□□□□□ -2.14
CUX1P39880 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.66□□□□□ -2.14
CUX1P39880 uc_338.9-201ENST00000617424 182 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AC092140.2-201ENST00000618027 521 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.66□□□□□ -2.14
CUX1P39880 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.65□□□□□ -2.15
CUX1P39880 AC233728.2-201ENST00000425348 757 ntBASIC1.65□□□□□ -2.15
CUX1P39880 EZH2P1-201ENST00000431167 291 ntBASIC1.65□□□□□ -2.15
CUX1P39880 PSPHP1-201ENST00000450062 261 ntBASIC1.65□□□□□ -2.15
CUX1P39880 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.65□□□□□ -2.15
CUX1P39880 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.65□□□□□ -2.15
CUX1P39880 AC025768.1-201ENST00000510057 267 ntBASIC1.65□□□□□ -2.15
CUX1P39880 RNA5SP330-201ENST00000517096 96 ntBASIC1.65□□□□□ -2.15
CUX1P39880 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.65□□□□□ -2.15
CUX1P39880 AL590095.2-201ENST00000604136 117 ntBASIC1.65□□□□□ -2.15
CUX1P39880 NUTF2P8-201ENST00000604593 363 ntBASIC1.65□□□□□ -2.15
CUX1P39880 AL050343.2-201ENST00000607338 280 ntBASIC1.65□□□□□ -2.15
CUX1P39880 AC116563.2-201ENST00000624751 535 ntBASIC1.65□□□□□ -2.15
CUX1P39880 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CUX1P39880 SNORA46.1-201ENST00000391069 153 ntBASIC1.64□□□□□ -2.15
CUX1P39880 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.64□□□□□ -2.15
CUX1P39880 ELOCP11-201ENST00000436690 332 ntBASIC1.64□□□□□ -2.15
CUX1P39880 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.64□□□□□ -2.15
CUX1P39880 ELOCP16-201ENST00000444494 332 ntBASIC1.64□□□□□ -2.15
CUX1P39880 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.64□□□□□ -2.15
CUX1P39880 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.64□□□□□ -2.15
CUX1P39880 MTCO3P35-201ENST00000485582 781 ntBASIC1.64□□□□□ -2.15
CUX1P39880 RPL30P11-201ENST00000495304 339 ntBASIC1.64□□□□□ -2.15
CUX1P39880 MTCYBP41-201ENST00000528913 1123 ntBASIC1.64□□□□□ -2.15
CUX1P39880 AP004247.1-201ENST00000531556 1289 ntBASIC1.64□□□□□ -2.15
CUX1P39880 HSPE1P4-201ENST00000550617 308 ntBASIC1.64□□□□□ -2.15
CUX1P39880 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.64□□□□□ -2.15
CUX1P39880 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CUX1P39880 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CUX1P39880 OR9N1P-202ENST00000494289 481 ntBASIC1.63□□□□□ -2.15
CUX1P39880 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.63□□□□□ -2.15
CUX1P39880 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.63□□□□□ -2.15
CUX1P39880 AC090616.5-202ENST00000582111 297 ntBASIC1.63□□□□□ -2.15
CUX1P39880 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.63□□□□□ -2.15
CUX1P39880 AC008739.2-201ENST00000597006 317 ntBASIC1.63□□□□□ -2.15
CUX1P39880 AC073592.7-201ENST00000623659 507 ntBASIC1.63□□□□□ -2.15
CUX1P39880 AC022513.1-201ENST00000624512 117 ntBASIC1.63□□□□□ -2.15
CUX1P39880 AL589743.1-201ENST00000551932 2712 ntBASIC1.62□□□□□ -2.15
CUX1P39880 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
CUX1P39880 Z86062.1-201ENST00000406773 777 ntBASIC1.62□□□□□ -2.15
CUX1P39880 SNORD56-201ENST00000413522 71 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AC004022.2-201ENST00000413824 193 ntBASIC1.62□□□□□ -2.15
CUX1P39880 GPM6BP3-201ENST00000442797 145 ntBASIC1.62□□□□□ -2.15
CUX1P39880 OR6K5P-201ENST00000447050 945 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AC092989.1-201ENST00000481235 277 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.62□□□□□ -2.15
CUX1P39880 AC113194.1-201ENST00000606037 500 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AL162373.1-201ENST00000620433 407 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AP001350.1-201ENST00000601906 1524 ntBASIC1.62□□□□□ -2.15
CUX1P39880 AC068050.1-201ENST00000394891 380 ntBASIC1.61□□□□□ -2.15
CUX1P39880 PTGES3P2-201ENST00000407942 482 ntBASIC1.61□□□□□ -2.15
CUX1P39880 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.61□□□□□ -2.15
CUX1P39880 AL031183.1-201ENST00000457667 207 ntBASIC1.61□□□□□ -2.15
CUX1P39880 AC010301.1-201ENST00000473936 355 ntBASIC1.61□□□□□ -2.15
CUX1P39880 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CUX1P39880 AC139769.3-201ENST00000618383 175 ntBASIC1.61□□□□□ -2.15
CUX1P39880 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.61□□□□□ -2.15
CUX1P39880 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.61□□□□□ -2.15
CUX1P39880 AP002784.2-201ENST00000397300 549 ntBASIC1.61□□□□□ -2.15
CUX1P39880 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.61□□□□□ -2.15
CUX1P39880 NEFMP1-201ENST00000443423 1006 ntBASIC1.61□□□□□ -2.15
CUX1P39880 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.61□□□□□ -2.15
CUX1P39880 AC079776.3-201ENST00000450665 370 ntBASIC1.61□□□□□ -2.15
CUX1P39880 HMGB1P38-201ENST00000490557 577 ntBASIC1.61□□□□□ -2.15
CUX1P39880 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CUX1P39880 ERHP1-201ENST00000523006 310 ntBASIC1.61□□□□□ -2.15
CUX1P39880 CBX3P8-201ENST00000532412 525 ntBASIC1.61□□□□□ -2.15
CUX1P39880 CBX3P7-201ENST00000532876 502 ntBASIC1.61□□□□□ -2.15
CUX1P39880 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CUX1P39880 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CUX1P39880 AC019131.2-201ENST00000609071 870 ntBASIC1.61□□□□□ -2.15
CUX1P39880 AC091812.1-201ENST00000432235 1948 ntBASIC1.6□□□□□ -2.15
CUX1P39880 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CUX1P39880 U8.3-201ENST00000363321 132 ntBASIC1.6□□□□□ -2.15
CUX1P39880 Y_RNA.258-201ENST00000364613 105 ntBASIC1.6□□□□□ -2.15
CUX1P39880 RNU6-1072P-201ENST00000384703 107 ntBASIC1.6□□□□□ -2.15
CUX1P39880 RNU6-443P-201ENST00000384780 107 ntBASIC1.6□□□□□ -2.15
CUX1P39880 MT-TP-201ENST00000387461 68 ntBASIC1.6□□□□□ -2.15
CUX1P39880 RNA5SP498-201ENST00000411342 120 ntBASIC1.6□□□□□ -2.15
CUX1P39880 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.6□□□□□ -2.15
CUX1P39880 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.6□□□□□ -2.15
CUX1P39880 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.6□□□□□ -2.15
CUX1P39880 DEFB108E-201ENST00000524692 240 ntBASIC1.6□□□□□ -2.15
CUX1P39880 AC022690.1-201ENST00000526681 550 ntBASIC1.6□□□□□ -2.15
CUX1P39880 AC091932.3-201ENST00000624223 323 ntBASIC1.6□□□□□ -2.15
CUX1P39880 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms