Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.19□□□□□ -1.9
MSH3P20585 AC115115.1-201ENST00000449927 248 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC108059.3-201ENST00000456388 214 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH3P20585 RPL7P5-201ENST00000471472 736 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RPS27AP1-201ENST00000475545 471 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC012181.1-201ENST00000479895 423 ntBASIC3.19□□□□□ -1.9
MSH3P20585 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH3P20585 AC022483.1-201ENST00000514020 567 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RNA5SP217-201ENST00000515959 91 ntBASIC3.19□□□□□ -1.9
MSH3P20585 Vault.3-201ENST00000516676 95 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RNA5SP337-201ENST00000517007 109 ntBASIC3.19□□□□□ -1.9
MSH3P20585 DEFB108A-201ENST00000530110 222 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.19□□□□□ -1.9
MSH3P20585 MIR5680-201ENST00000577577 84 ntBASIC3.19□□□□□ -1.9
MSH3P20585 MIR3167-201ENST00000579623 85 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH3P20585 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH3P20585 AL161734.1-201ENST00000609720 557 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AL360181.4-201ENST00000621752 134 ntBASIC3.19□□□□□ -1.9
MSH3P20585 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH3P20585 AC068137.3-201ENST00000639191 341 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC073869.6-201ENST00000640656 341 ntBASIC3.19□□□□□ -1.9
MSH3P20585 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH3P20585 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.19□□□□□ -1.9
MSH3P20585 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH3P20585 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH3P20585 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH3P20585 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSH3P20585 MAPK10-362ENST00000641864 4484 ntBASIC3.18□□□□□ -1.9
MSH3P20585 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
MSH3P20585 OR1S2-201ENST00000302592 978 ntBASIC3.18□□□□□ -1.9
MSH3P20585 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
MSH3P20585 RNU5E-8P-201ENST00000363502 116 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RNY3P13-201ENST00000365542 102 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RNU6-1074P-201ENST00000383995 104 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RNU6-432P-201ENST00000384196 109 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RNU6-882P-201ENST00000391025 103 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RNU2-43P-201ENST00000410306 190 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 UBE2V1P10-201ENST00000414685 269 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AL353678.1-201ENST00000422735 741 ntBASIC3.18□□□□□ -1.9
MSH3P20585 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
MSH3P20585 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 DUTP6-201ENST00000425573 462 ntBASIC3.18□□□□□ -1.9
MSH3P20585 MTCO3P30-201ENST00000426425 670 ntBASIC3.18□□□□□ -1.9
MSH3P20585 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH3P20585 OR2B8P-201ENST00000432841 938 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AC090774.1-201ENST00000435925 246 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AL136380.1-201ENST00000447970 162 ntBASIC3.18□□□□□ -1.9
MSH3P20585 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AC093392.2-201ENST00000450682 337 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC093899.1-201ENST00000457984 376 ntBASIC3.18□□□□□ -1.9
MSH3P20585 MTCO2P29-201ENST00000465212 189 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC004924.1-201ENST00000480160 781 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH3P20585 RNU6-506P-201ENST00000516553 94 ntBASIC3.18□□□□□ -1.9
MSH3P20585 SCARNA20.6-201ENST00000517251 106 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSH3P20585 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 OR4H12P-201ENST00000556269 907 ntBASIC3.18□□□□□ -1.9
MSH3P20585 RPL21P12-201ENST00000559810 515 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.18□□□□□ -1.9
MSH3P20585 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH3P20585 AC107304.1-201ENST00000604229 296 ntBASIC3.18□□□□□ -1.9
MSH3P20585 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH3P20585 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH3P20585 AL450472.3-201ENST00000615578 367 ntBASIC3.18□□□□□ -1.9
MSH3P20585 AC019226.1-201ENST00000625666 515 ntBASIC3.18□□□□□ -1.9
MSH3P20585 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
MSH3P20585 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
MSH3P20585 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSH3P20585 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
MSH3P20585 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSH3P20585 AC110774.1-201ENST00000623567 2018 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU6-50P-201ENST00000362356 103 ntBASIC3.17□□□□□ -1.9
MSH3P20585 SNORA38.1-201ENST00000364172 131 ntBASIC3.17□□□□□ -1.9
MSH3P20585 Y_RNA.296-201ENST00000364930 108 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU6-169P-201ENST00000365336 107 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU6-1103P-201ENST00000384150 107 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU6-278P-201ENST00000390945 109 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU4-65P-201ENST00000410473 140 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU2-62P-201ENST00000410868 191 ntBASIC3.17□□□□□ -1.9
MSH3P20585 FCF1P9-201ENST00000412546 282 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC007283.2-201ENST00000424739 197 ntBASIC3.17□□□□□ -1.9
MSH3P20585 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.17□□□□□ -1.9
MSH3P20585 MTCO1P39-201ENST00000426148 480 ntBASIC3.17□□□□□ -1.9
MSH3P20585 DPPA2P1-201ENST00000428060 556 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH3P20585 AC133104.1-201ENST00000429100 218 ntBASIC3.17□□□□□ -1.9
MSH3P20585 MTND3P21-201ENST00000433774 331 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC119618.1-201ENST00000434191 222 ntBASIC3.17□□□□□ -1.9
MSH3P20585 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC093156.1-201ENST00000440382 670 ntBASIC3.17□□□□□ -1.9
MSH3P20585 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms