Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR6868-201ENST00000611215 58 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AC093838.1-201ENST00000613014 469 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AC140113.4-201ENST00000622087 222 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A1P12109 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 AC244517.1-201ENST00000606030 2086 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AC027287.1-201ENST00000553115 1453 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
COL6A1P12109 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 OTUD4P1-201ENST00000237841 3067 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL6A1P12109 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL6A1P12109 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.54□□□□□ -1.68
COL6A1P12109 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 AL139276.1-201ENST00000311910 1001 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A1P12109 RNU6-254P-201ENST00000363377 107 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 Y_RNA.144-201ENST00000363521 113 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 RNA5SP22-201ENST00000365393 109 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 Y_RNA.414-201ENST00000384011 101 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 RNU6-629P-201ENST00000384061 103 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 Y_RNA.445-201ENST00000384168 102 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 RNA5SP129-201ENST00000410276 118 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 OR2AS1P-201ENST00000427827 319 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 MTND3P2-201ENST00000438452 342 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 CEACAMP4-201ENST00000457676 421 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 snoU13.4-201ENST00000458916 104 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 RNU7-59P-201ENST00000459101 61 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A1P12109 AC020893.1-201ENST00000502452 580 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AC074250.1-201ENST00000511117 192 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 HMGB1P41-201ENST00000520234 440 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.54□□□□□ -1.68
COL6A1P12109 IGKV2D-19-201ENST00000523346 262 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AP005435.4-201ENST00000529514 284 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A1P12109 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A1P12109 ZNF192P1-203ENST00000565888 810 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 MIR4775-201ENST00000581168 75 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 MIR5195-201ENST00000583555 115 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 POLR3GP2-201ENST00000588366 668 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 AL627309.6-201ENST00000606857 840 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 U6.114-201ENST00000636407 96 ntBASIC4.54□□□□□ -1.68
COL6A1P12109 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
COL6A1P12109 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A1P12109 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.54□□□□□ -1.68
COL6A1P12109 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 RNU6-1029P-201ENST00000384109 107 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 SNORD66.1-201ENST00000391230 76 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 LAP3P1-201ENST00000403648 294 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 Z92545.1-201ENST00000411782 234 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 TOMM22P1-201ENST00000418578 312 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A1P12109 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 ABCF2P2-201ENST00000450549 296 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AC107399.1-201ENST00000451226 265 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 ANP32BP2-201ENST00000454525 545 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 SNRPFP3-201ENST00000457792 225 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 SNORD121B-201ENST00000458838 81 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AC012181.1-201ENST00000479895 423 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A1P12109 AL163540.1-201ENST00000485382 386 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AC083904.1-201ENST00000487828 231 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A1P12109 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.53□□□□□ -1.68
COL6A1P12109 Y_RNA.711-201ENST00000516993 102 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.53□□□□□ -1.68
COL6A1P12109 AC103843.2-201ENST00000530523 682 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A1P12109 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 MIR3690-201ENST00000580266 75 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 APOOP1-201ENST00000604695 592 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AL080274.1-201ENST00000605565 220 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 AL590099.1-201ENST00000615276 138 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AL138721.1-201ENST00000616756 179 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AF117829.1-206ENST00000621883 3802 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 MTND4LP32-201ENST00000636111 270 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL6A1P12109 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 SCN1A-220ENST00000641603 12506 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A1P12109 TAB3P1-202ENST00000452645 1634 ntBASIC4.53□□□□□ -1.68
COL6A1P12109 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms