Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PCNAP1-201ENST00000505363 709 ntBASIC1.65□□□□□ -2.15
CCDC88BA6NC98 BTF3P12-201ENST00000519620 469 ntBASIC1.65□□□□□ -2.15
CCDC88BA6NC98 AC008133.2-201ENST00000624540 351 ntBASIC1.65□□□□□ -2.15
CCDC88BA6NC98 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC88BA6NC98 AC004022.2-201ENST00000413824 193 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 RPL21P90-201ENST00000415692 466 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 AL357134.1-201ENST00000445848 426 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 AC078857.1-201ENST00000469870 667 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.64□□□□□ -2.15
CCDC88BA6NC98 GLYCAM1-201ENST00000546596 285 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC88BA6NC98 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC88BA6NC98 MIR4714-201ENST00000580728 77 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 AC090616.3-201ENST00000582184 217 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC88BA6NC98 AC005332.10-201ENST00000612725 619 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 MIR6857-201ENST00000613267 93 ntBASIC1.64□□□□□ -2.15
CCDC88BA6NC98 MIR625-201ENST00000385047 85 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 RNA5SP498-201ENST00000411342 120 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC234781.2-201ENST00000426370 994 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC88BA6NC98 OR9N1P-202ENST00000494289 481 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC021146.8-201ENST00000507455 733 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 CBX3P8-201ENST00000532412 525 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 CBX3P7-201ENST00000532876 502 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AL121821.2-201ENST00000556081 394 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC022662.1-201ENST00000580252 331 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC107214.2-201ENST00000608204 634 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC108706.1-201ENST00000611053 297 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MIR6076-201ENST00000617521 113 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC091812.1-201ENST00000432235 1948 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC010889.1-201ENST00000566193 2666 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MTND4LP21-201ENST00000415303 295 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC097493.1-201ENST00000463958 372 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MRPS17P9-201ENST00000511924 393 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MRPS33P3-201ENST00000513456 322 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC022880.1-201ENST00000534017 973 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MIR4698-201ENST00000577795 80 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AL138880.2-201ENST00000616214 239 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 AC020923.1-201ENST00000624021 917 ntBASIC1.63□□□□□ -2.15
CCDC88BA6NC98 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 TEX21P-201ENST00000447107 1476 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 ARF4P4-201ENST00000439608 520 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 CUL4AP1-201ENST00000514750 1863 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 CIR1P1-201ENST00000524055 1133 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 DEFB108E-201ENST00000524692 240 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 SUB1P4-201ENST00000566062 339 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 AL096840.1-201ENST00000603287 93 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 AC034236.3-201ENST00000605999 461 ntBASIC1.62□□□□□ -2.15
CCDC88BA6NC98 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.62□□□□□ -2.15
CCDC88BA6NC98 SNORD14B-201ENST00000364533 90 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 MIR676-201ENST00000390702 67 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AC008850.1-201ENST00000427546 362 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 RPL30P4-201ENST00000429309 333 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AC110792.2-201ENST00000510278 224 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 OR10V3P-201ENST00000525712 725 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AC023825.1-201ENST00000566704 1030 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AGGF1P5-201ENST00000567900 919 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC88BA6NC98 FAM71BP1-201ENST00000604431 523 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC88BA6NC98 AC139769.3-201ENST00000618383 175 ntBASIC1.61□□□□□ -2.15
CCDC88BA6NC98 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC88BA6NC98 RABEPKP1-201ENST00000440529 1026 ntBASIC1.6□□□□□ -2.15
CCDC88BA6NC98 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.6□□□□□ -2.15
CCDC88BA6NC98 HSPE1P4-201ENST00000550617 308 ntBASIC1.6□□□□□ -2.15
CCDC88BA6NC98 AC112191.3-201ENST00000604371 277 ntBASIC1.6□□□□□ -2.15
CCDC88BA6NC98 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88BA6NC98 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.6□□□□□ -2.15
CCDC88BA6NC98 SDR42E1P2-201ENST00000614861 481 ntBASIC1.6□□□□□ -2.15
CCDC88BA6NC98 SDR42E1P4-201ENST00000620894 481 ntBASIC1.6□□□□□ -2.15
CCDC88BA6NC98 AL022400.1-201ENST00000423946 935 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 MTCO3P46-201ENST00000425787 232 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC88BA6NC98 TRIM60P13-201ENST00000432350 1283 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 RNU7-26P-201ENST00000458980 63 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 AC020699.1-201ENST00000505161 445 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 AC116563.2-201ENST00000624751 535 ntBASIC1.59□□□□□ -2.15
CCDC88BA6NC98 DDX43P2-201ENST00000604753 1354 ntBASIC1.59□□□□□ -2.16
CCDC88BA6NC98 AC009812.4-201ENST00000569134 1805 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 MIR150-201ENST00000385048 84 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
CCDC88BA6NC98 RNU11-5P-201ENST00000391216 129 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 ELOCP11-201ENST00000436690 332 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 ELOCP16-201ENST00000444494 332 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CCDC88BA6NC98 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC88BA6NC98 HSBP1P1-201ENST00000555205 166 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms