Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR548AB-201ENST00000584917 84 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC083760.1-201ENST00000589621 670 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC009159.1-201ENST00000618386 642 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC068057.2-201ENST00000624047 895 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC009487.2-201ENST00000420969 6821 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 GNG5P1-201ENST00000255500 204 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RNU5E-5P-201ENST00000365379 116 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 SNORD115.1-201ENST00000391109 76 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC096664.2-201ENST00000411843 406 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RPL17P12-201ENST00000413391 526 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC245054.2-201ENST00000415639 319 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC090960.1-201ENST00000421072 306 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC008850.1-201ENST00000427546 362 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AL139132.1-201ENST00000431587 344 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 COX6CP12-201ENST00000446748 202 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RPL37P4-201ENST00000448908 268 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AL590365.1-201ENST00000450788 243 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AL031183.1-201ENST00000457667 207 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RNU7-59P-201ENST00000459101 61 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RPS29P26-201ENST00000477483 171 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RPL23AP41-201ENST00000484754 458 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC022616.6-201ENST00000520479 119 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 CASP1P1-201ENST00000526345 212 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 NUTF2P8-201ENST00000604593 363 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 AC012360.2-201ENST00000609349 391 ntBASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.21□□□□□ -1.9
CPSF3Q9UKF6 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 MTND5P7-201ENST00000413558 1798 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 RNU6-223P-201ENST00000362830 107 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 RNU5A-8P-201ENST00000364102 114 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 RNA5SP139-201ENST00000364340 117 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AL353777.1-201ENST00000425552 326 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC005094.1-201ENST00000440420 368 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 MTCO3P45-201ENST00000443036 613 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 UQCRHP3-201ENST00000451503 251 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 RN7SL633P-201ENST00000488974 297 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC112204.1-201ENST00000502591 103 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC245166.1-201ENST00000521012 253 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AL451007.1-201ENST00000595491 289 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC079089.3-201ENST00000603094 673 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC135507.2-201ENST00000612443 309 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC092140.2-201ENST00000618027 521 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 MTND4P4-201ENST00000439033 1366 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 AC010680.1-201ENST00000590024 3590 ntBASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CPSF3Q9UKF6 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 MIR148B-201ENST00000362252 99 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 Y_RNA.608-201ENST00000410647 95 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL356583.2-201ENST00000426536 280 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL590383.1-201ENST00000428602 75 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 TIMM9P1-201ENST00000436122 256 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 TAAR7P-201ENST00000436141 242 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 RPL22P17-201ENST00000438729 315 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC008481.1-201ENST00000463278 396 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 190.3 ms