Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 FTLP6-201ENST00000355274 422 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 MIR148B-201ENST00000362252 99 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RNU6-1167P-201ENST00000363227 94 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RNU6-511P-201ENST00000363496 107 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AL357075.1-201ENST00000404107 726 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 CYCSP46-201ENST00000423569 204 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RAC1P6-201ENST00000423911 575 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RPL7P46-201ENST00000425129 740 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC010153.1-201ENST00000432862 727 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AL714022.1-201ENST00000439897 151 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 MTND1P26-201ENST00000440488 538 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 RNU7-23P-201ENST00000459465 62 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AP002884.2-201ENST00000471647 395 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC233702.1-201ENST00000482905 502 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RN7SL432P-201ENST00000484057 298 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC118465.1-201ENST00000513820 1271 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RNA5SP380-201ENST00000517190 98 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AP003467.2-201ENST00000520175 319 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RPS3AP4-201ENST00000555161 764 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 AL161756.2-201ENST00000604597 246 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 FTX_3.1-201ENST00000610451 147 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 AL442067.2-201ENST00000614033 363 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS28Q9UK41 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS28Q9UK41 API5P2-201ENST00000397055 1498 ntBASIC3.35□□□□□ -1.87
VPS28Q9UK41 RNU4-21P-201ENST00000362802 126 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 RNU6-701P-201ENST00000384059 107 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 SNORD116-8-201ENST00000384365 95 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 SNORA26.8-201ENST00000391306 124 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC119618.1-201ENST00000434191 222 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 Z75741.1-201ENST00000446793 314 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 RPL7P5-201ENST00000471472 736 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 SNORA31.3-201ENST00000516029 96 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 RNU2-10P-201ENST00000516375 211 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AL845331.3-202ENST00000562856 261 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC005951.1-201ENST00000576706 485 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 MIR548AB-201ENST00000584917 84 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC121247.2-201ENST00000604776 136 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 AC103710.2-201ENST00000609912 942 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS28Q9UK41 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS28Q9UK41 MIR3651-201ENST00000630427 90 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 MTND5P29-201ENST00000458676 1807 ntBASIC3.34□□□□□ -1.87
VPS28Q9UK41 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VPS28Q9UK41 AL355596.1-201ENST00000565399 3996 ntBASIC3.34□□□□□ -1.88
VPS28Q9UK41 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS28Q9UK41 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS28Q9UK41 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 SRP72P2-201ENST00000344851 1979 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 MIR491-201ENST00000384877 84 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 RNU2-36P-201ENST00000410361 191 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 NPM1P11-201ENST00000417106 855 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 SEPT2P1-201ENST00000419651 180 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC104651.1-201ENST00000427559 735 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 RPL23AP83-201ENST00000434984 473 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC026427.2-201ENST00000506228 536 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AP006587.4-201ENST00000526053 529 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AP003181.2-201ENST00000528941 181 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 ARL2BPP2-201ENST00000550907 489 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 RPL21P5-201ENST00000554662 472 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC098826.3-201ENST00000603823 466 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC107294.1-201ENST00000609524 467 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC108479.2-201ENST00000617314 601 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC025048.6-202ENST00000627667 438 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 AC099654.13-201ENST00000639774 207 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 157.4 ms