Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 SNORA23-201ENST00000365128 182 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 RNU1-100P-201ENST00000365255 165 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 MIR1305-201ENST00000408300 86 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AL359704.1-201ENST00000411586 781 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 TPMTP3-201ENST00000411928 735 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 HMGB1P11-201ENST00000413899 637 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC080125.1-201ENST00000414888 684 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC098592.1-201ENST00000419352 333 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 RPL7L1P10-201ENST00000427790 463 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 MTCYBP3-201ENST00000445588 1137 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 MTND1P9-201ENST00000453775 944 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 OR6K1P-201ENST00000456766 971 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC133134.1-201ENST00000466800 359 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 RPS27AP9-201ENST00000477681 438 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC022447.3-201ENST00000506865 495 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 TTC39CP1-201ENST00000512513 755 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 SNORA3.4-201ENST00000515969 96 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC087276.1-201ENST00000529659 480 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AP004247.1-201ENST00000531556 1289 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 SETP2-201ENST00000553886 926 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC005951.2-201ENST00000576282 495 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC079089.3-201ENST00000603094 673 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC018714.1-201ENST00000605028 208 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 BCRP9-201ENST00000605312 388 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AL627309.6-201ENST00000606857 840 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 BX664608.1-201ENST00000610519 487 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC009268.2-201ENST00000621925 457 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AP003485.2-201ENST00000623636 610 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MTND5P33-201ENST00000571250 1450 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 FTLP6-201ENST00000355274 422 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MIR592-201ENST00000384959 97 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MIR325-201ENST00000385260 98 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 RNU6-754P-201ENST00000391166 107 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AL590084.2-201ENST00000401481 382 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 CCNG1P1-201ENST00000406783 885 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MTND1P21-201ENST00000412991 285 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC011233.1-201ENST00000422812 283 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 TAAR7P-201ENST00000436141 242 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 Z96811.1-201ENST00000445880 108 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 TPT1P14-201ENST00000448018 505 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 RNA5SP320-201ENST00000516263 124 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 RNU6-1256P-201ENST00000516539 103 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 ACTR3BP3-201ENST00000565577 979 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 MTCO3P13-201ENST00000577757 781 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 NUTF2P8-201ENST00000604593 363 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AL139344.1-201ENST00000605228 195 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC112204.3-201ENST00000623822 332 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC017037.3-201ENST00000625016 472 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC104454.1-201ENST00000421341 1401 ntBASIC2.92□□□□□ -1.94
VPS54Q9P1Q0 AC091564.4-201ENST00000533934 2194 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC092125.1-201ENST00000562568 1995 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 Y_RNA.18-201ENST00000362461 102 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 SNORD56.5-201ENST00000364281 72 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNA5SP139-201ENST00000364340 117 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNU6-660P-201ENST00000364566 109 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNU6-432P-201ENST00000384196 109 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNU6-769P-201ENST00000384407 104 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 MIR23A-201ENST00000385245 73 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms