Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 OR52H1-202ENST00000641796 1061 ntBASIC4.15□□□□□ -1.75
DDX56Q9NY93 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
DDX56Q9NY93 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
DDX56Q9NY93 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
DDX56Q9NY93 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
DDX56Q9NY93 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
DDX56Q9NY93 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 RNU1-32P-201ENST00000363937 159 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 RNU6-270P-201ENST00000364131 105 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 U1.1-201ENST00000384101 164 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 RNU6-198P-201ENST00000384258 104 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 RNU6-1158P-201ENST00000391167 107 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC068050.1-201ENST00000394891 380 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL591416.1-201ENST00000404015 867 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC016397.1-201ENST00000412463 242 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL158156.1-201ENST00000422509 473 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 RPL7P46-201ENST00000425129 740 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 HIGD1AP11-201ENST00000438361 280 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC003071.1-201ENST00000451219 789 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL672167.3-201ENST00000465951 960 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 RPL7L1P8-201ENST00000469911 741 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 SNORA40.12-201ENST00000516329 111 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AP003122.3-201ENST00000526316 255 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC084851.1-201ENST00000529105 249 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC107016.1-201ENST00000550463 337 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL157687.1-201ENST00000554853 619 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL121576.1-201ENST00000556055 276 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL157871.3-201ENST00000557231 293 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL360157.1-201ENST00000565962 87 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 RN7SL600P-201ENST00000581811 299 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC008752.3-201ENST00000588113 712 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AP001596.2-201ENST00000608410 312 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC092954.2-201ENST00000609103 430 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 MIR6820-201ENST00000611508 62 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL161629.2-201ENST00000615347 275 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL445567.2-201ENST00000618935 498 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AC024940.5-201ENST00000622889 474 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 AL160394.1-201ENST00000624765 724 ntBASIC4.14□□□□□ -1.75
DDX56Q9NY93 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.14□□□□□ -1.75
DDX56Q9NY93 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DDX56Q9NY93 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX56Q9NY93 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC004972.1-201ENST00000623934 2209 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX56Q9NY93 Y_RNA.33-201ENST00000362591 102 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 RNA5SP399-201ENST00000364003 117 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 Y_RNA.255-201ENST00000364581 97 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 RNU6-116P-201ENST00000384042 109 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 RNU6-550P-201ENST00000391057 101 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 UBE2V1P2-201ENST00000397758 440 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 HMGB3P20-201ENST00000417997 600 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 RPL18P10-201ENST00000425606 538 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AL500522.2-201ENST00000448562 343 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 AL162395.1-201ENST00000457882 422 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC034236.1-201ENST00000469891 373 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AP002884.2-201ENST00000471647 395 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AL132838.2-201ENST00000492041 314 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC026801.1-201ENST00000497178 464 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DDX56Q9NY93 PSMA2P1-201ENST00000526365 646 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC103843.2-201ENST00000530523 682 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 CYCSP29-201ENST00000533731 318 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 MIR5692A1-201ENST00000580523 69 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 MTATP6P3-201ENST00000581686 676 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms