Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC099654.7-201ENST00000635788 2127 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC092447.7-201ENST00000422212 1621 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RNU5A-8P-201ENST00000364102 114 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AL357075.1-201ENST00000404107 726 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RPL7P8-201ENST00000411964 730 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 BX323014.1-201ENST00000412876 237 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AL096701.2-201ENST00000416920 238 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 PIGFP3-201ENST00000441918 722 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 GDI2P2-201ENST00000445131 608 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 BMI1P1-201ENST00000445879 941 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC092798.1-201ENST00000458542 409 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 snoU13.28-201ENST00000459235 104 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC008155.2-201ENST00000464337 397 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC008571.1-201ENST00000467232 300 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RPL30P6-201ENST00000475925 342 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC068587.2-201ENST00000478386 781 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RPS3AP22-201ENST00000488297 769 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RN7SKP43-201ENST00000516173 320 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RNA5SP76-201ENST00000516277 87 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RNU6-928P-201ENST00000516876 104 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 RNU6-201P-201ENST00000517100 61 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC007115.1-201ENST00000546853 234 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC093012.1-202ENST00000549403 582 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC106782.4-201ENST00000568264 210 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC245517.5-201ENST00000611529 162 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC135507.2-201ENST00000612443 309 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 SNHG22-203ENST00000617833 660 ntBASIC2.82□□□□□ -1.96
DDX28Q9NUL7 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.82□□□□□ -1.96
DDX28Q9NUL7 AC010680.1-201ENST00000590024 3590 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 VTRNA1-1-201ENST00000363120 99 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 RNA5SP139-201ENST00000364340 117 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 SNORA48.5-201ENST00000391143 135 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 U3.26-201ENST00000391236 204 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 RPS20P2-201ENST00000402520 389 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AL356057.2-201ENST00000403318 432 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 RNU2-33P-201ENST00000410344 192 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AL365184.2-201ENST00000431139 435 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 UBE2D3P1-201ENST00000436669 444 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC110794.1-201ENST00000505816 425 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC005178.1-201ENST00000508392 440 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 MRPS33P3-201ENST00000513456 322 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 RNU6-64P-201ENST00000517119 105 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC012435.1-202ENST00000568772 240 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AL356432.3-201ENST00000568952 465 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 MIR2682-201ENST00000580305 110 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 KC877982.1-201ENST00000602313 470 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AL162713.1-201ENST00000604480 262 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC090970.3-201ENST00000612566 866 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC091304.6-201ENST00000619761 202 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC079248.2-201ENST00000623779 326 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 AC093591.3-201ENST00000634516 308 ntBASIC2.81□□□□□ -1.96
DDX28Q9NUL7 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
DDX28Q9NUL7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AL445523.1-201ENST00000451184 1362 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 SNORD21-201ENST00000383953 95 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RNU6-198P-201ENST00000384258 104 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RPL7P25-201ENST00000404151 721 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RPL17P12-201ENST00000413391 526 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AL353777.1-201ENST00000425552 326 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC005300.1-201ENST00000428401 373 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC007919.1-201ENST00000429380 217 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 TIMM9P1-201ENST00000436122 256 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC020550.1-201ENST00000447385 163 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 GSTA11P-201ENST00000452866 669 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RNU7-125P-201ENST00000458760 62 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 BZW1P2-201ENST00000473537 826 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 KC877373.1-201ENST00000479066 408 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms