Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-297P-201ENST00000384636 107 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AL031121.1-201ENST00000406553 254 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 MIR1305-201ENST00000408300 86 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.16□□□□□ -1.9
USP28Q96RU2 MTCO1P17-201ENST00000411522 491 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 CDK8P2-201ENST00000415020 547 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 SSXP9-201ENST00000417503 292 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 RPL35AP12-201ENST00000425362 338 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC109583.1-201ENST00000432156 268 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 RPS24P1-201ENST00000438550 371 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 SDCBPP1-201ENST00000440192 890 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP28Q96RU2 GSTA11P-201ENST00000452866 669 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP28Q96RU2 RPL30P14-201ENST00000482744 348 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.16□□□□□ -1.9
USP28Q96RU2 AC006390.1-201ENST00000508068 283 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.16□□□□□ -1.9
USP28Q96RU2 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.16□□□□□ -1.9
USP28Q96RU2 GMPSP1-201ENST00000514075 579 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 FABP5P5-201ENST00000515537 406 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AP002963.1-201ENST00000530590 184 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.16□□□□□ -1.9
USP28Q96RU2 EEF1B2P4-201ENST00000551398 348 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
USP28Q96RU2 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.16□□□□□ -1.9
USP28Q96RU2 CYCSP39-201ENST00000565821 309 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.16□□□□□ -1.9
USP28Q96RU2 MTND1P15-201ENST00000579262 949 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.16□□□□□ -1.9
USP28Q96RU2 AC023043.3-201ENST00000593113 385 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC012669.1-201ENST00000603209 283 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC055876.5-201ENST00000605667 259 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC098614.4-201ENST00000607601 462 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC009570.1-201ENST00000609599 745 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AC099842.1-201ENST00000619919 596 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AP003122.6-201ENST00000623831 495 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 AL603839.4-201ENST00000624658 1005 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP28Q96RU2 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.16□□□□□ -1.9
USP28Q96RU2 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.16□□□□□ -1.9
USP28Q96RU2 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.15□□□□□ -1.9
USP28Q96RU2 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.15□□□□□ -1.9
USP28Q96RU2 CCT4P2-201ENST00000233836 1548 ntBASIC3.15□□□□□ -1.9
USP28Q96RU2 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
USP28Q96RU2 RNU6-533P-201ENST00000384144 107 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 RNU6-1119P-201ENST00000384349 108 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 RPL5P18-201ENST00000406671 891 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL592148.1-201ENST00000413568 445 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 ZNF885P-201ENST00000420174 1098 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 AC112220.1-201ENST00000434628 355 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.15□□□□□ -1.91
USP28Q96RU2 AL592447.1-201ENST00000447592 540 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 AL590365.1-201ENST00000450788 243 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL353691.1-201ENST00000451332 387 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 RNA5SP269-201ENST00000459032 137 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC010625.1-201ENST00000511296 403 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.15□□□□□ -1.91
USP28Q96RU2 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
USP28Q96RU2 MTND4LP18-201ENST00000526864 291 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.15□□□□□ -1.91
USP28Q96RU2 ZNF519P3-201ENST00000557158 1032 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AP005205.1-201ENST00000563503 508 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL353997.4-201ENST00000586196 166 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 UBE2L4-201ENST00000587688 464 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.15□□□□□ -1.91
USP28Q96RU2 AC078795.2-201ENST00000602835 1252 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC112187.2-201ENST00000604345 283 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC007179.3-201ENST00000604976 235 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC012557.2-201ENST00000605919 418 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL139286.2-201ENST00000606838 396 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC091965.4-201ENST00000607691 587 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.15□□□□□ -1.91
USP28Q96RU2 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
USP28Q96RU2 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AL158801.5-201ENST00000623123 465 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.15□□□□□ -1.91
USP28Q96RU2 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP28Q96RU2 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
USP28Q96RU2 MAPK10-322ENST00000641485 4530 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 TEX21P-201ENST00000447107 1476 ntBASIC3.15□□□□□ -1.91
USP28Q96RU2 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USP28Q96RU2 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 SNORD51-201ENST00000384320 80 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 RNU6-1207P-201ENST00000384343 107 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 MIR23B-201ENST00000384832 97 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 RPS4XP3-201ENST00000398541 413 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AL512633.1-201ENST00000399931 655 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 RPS20P2-201ENST00000402520 389 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AL356421.1-201ENST00000403255 413 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 EEF1A1P41-201ENST00000414667 207 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms