Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL139418.1-201ENST00000613613 177 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AP000676.3-201ENST00000623299 569 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC112204.3-201ENST00000623822 332 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC010297.1-201ENST00000623948 149 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MTND1P37-201ENST00000636562 264 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS35Q96QK1 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 ASNSP3-201ENST00000451989 1306 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS35Q96QK1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 RNU1-105P-201ENST00000363470 161 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 MIR767-201ENST00000390228 109 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 RNA5SP354-201ENST00000391247 136 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 MIR1305-201ENST00000408300 86 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL592148.1-201ENST00000413568 445 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC009414.1-201ENST00000427200 443 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC112220.1-201ENST00000434628 355 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC009961.3-201ENST00000449832 765 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC027673.1-201ENST00000456245 405 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC087588.1-201ENST00000462203 316 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC090525.1-201ENST00000479116 478 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC009901.1-201ENST00000506703 541 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 RNA5SP356-201ENST00000515972 94 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 RNU5A-4P-201ENST00000516588 111 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 MTCO1P47-201ENST00000523889 1271 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL391261.3-201ENST00000557194 520 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AL133153.1-201ENST00000557756 303 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 BNIP3P23-201ENST00000599655 511 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 RPL23AP78-201ENST00000599928 470 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC010620.2-201ENST00000600135 313 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC005046.1-201ENST00000608515 625 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AC004908.2-201ENST00000609090 574 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.69□□□□□ -1.98
VPS35Q96QK1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
VPS35Q96QK1 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS35Q96QK1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS35Q96QK1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 MIR19A-201ENST00000384878 82 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AL512633.1-201ENST00000399931 655 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AL008987.1-201ENST00000415528 237 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 MTCYBP3-201ENST00000445588 1137 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 ANKRD26P4-201ENST00000455755 950 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC020699.1-201ENST00000505161 445 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC110760.3-202ENST00000515177 371 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 RNU6-390P-201ENST00000516259 103 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 MTND2P32-201ENST00000521584 1038 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC068587.4-201ENST00000533893 186 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC061975.8-201ENST00000587058 721 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC144521.1-201ENST00000607148 956 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 SNHG22-203ENST00000617833 660 ntBASIC2.68□□□□□ -1.98
VPS35Q96QK1 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS35Q96QK1 AC092125.1-201ENST00000562568 1995 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 Z82195.2-201ENST00000612348 18351 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 FTLP6-201ENST00000355274 422 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 RNA5SP88-201ENST00000365560 109 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS35Q96QK1 RNU6-140P-201ENST00000384566 108 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 RPL17P50-201ENST00000396131 546 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL122016.1-201ENST00000403365 367 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms