Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC087190.4-201ENST00000574616 8334 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 RNU4-44P-201ENST00000363050 141 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 Y_RNA.133-201ENST00000363428 110 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-511P-201ENST00000363496 107 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 RNU2-15P-201ENST00000410692 191 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 ATP5A1P2-201ENST00000412323 255 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AL118520.1-201ENST00000450770 291 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 EIF4A1P11-201ENST00000451239 222 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AL353691.1-201ENST00000451332 387 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AC007967.1-201ENST00000455422 1159 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AP000942.1-201ENST00000463969 747 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 RPS26P28-201ENST00000470806 348 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 FTH1P24-201ENST00000503502 462 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 PPBPP1-201ENST00000510807 373 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1046P-201ENST00000516538 107 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 SNORA70.24-201ENST00000517233 118 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AP001804.3-201ENST00000525146 880 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 SNRPGP18-201ENST00000553000 214 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 MIR4703-201ENST00000577728 79 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 AL137849.1-201ENST00000604767 169 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 MIR7154-201ENST00000620673 73 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 U6.114-201ENST00000636407 96 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 PRO1804-201ENST00000623780 2050 ntBASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.99□□□□□ -1.61
USHBP1Q8N6Y0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AL592114.1-201ENST00000403842 483 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC005517.2-201ENST00000424673 553 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 RPL7L1P10-201ENST00000427790 463 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 EZH2P1-201ENST00000431167 291 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC069285.2-201ENST00000440210 275 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 RPS3AP46-201ENST00000448352 682 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 MTND5P22-201ENST00000458380 195 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 RNU7-59P-201ENST00000459101 61 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 COX7A2P2-201ENST00000505291 250 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC017037.1-201ENST00000508460 471 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 RPL39P5-202ENST00000512505 151 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC093303.1-201ENST00000514549 295 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1088P-201ENST00000516850 104 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 MYL12AP1-201ENST00000518490 515 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AP000857.1-201ENST00000532151 543 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 DNAJC8P1-201ENST00000554535 372 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC100830.2-201ENST00000581636 240 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 MIR3942-201ENST00000585264 109 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 CTHRC1P1-201ENST00000605383 469 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC092807.2-201ENST00000609367 243 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AL590099.1-201ENST00000615276 138 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 uc_338.34-201ENST00000617467 174 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AC074029.4-201ENST00000624796 1859 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 AL451142.2-201ENST00000429076 2090 ntBASIC4.98□□□□□ -1.61
USHBP1Q8N6Y0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1105P-201ENST00000384774 107 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 MIR218-2-201ENST00000385006 110 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 MIR483-201ENST00000385070 76 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 MIR548F5-201ENST00000408421 86 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RPL37P10-201ENST00000412884 288 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC105402.2-201ENST00000438503 358 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms