Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
DEPDC4Q8N2C3 AL136964.1-201ENST00000622038 2990 ntBASIC5.15□□□□□ -1.59
DEPDC4Q8N2C3 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
DEPDC4Q8N2C3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.15□□□□□ -1.59
DEPDC4Q8N2C3 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 snoU2_19.2-201ENST00000363024 80 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 Y_RNA.123-201ENST00000363338 102 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 SNORD27-201ENST00000363981 72 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RNU6-338P-201ENST00000383888 105 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RNU6-72P-201ENST00000384285 79 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 BTF3L4P2-201ENST00000392798 346 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AL133270.1-201ENST00000402635 279 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RPL17P36-201ENST00000420302 549 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RPL23AP25-201ENST00000430973 463 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RPL23AP22-201ENST00000437556 453 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC009237.8-201ENST00000445492 379 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RN7SL269P-201ENST00000467795 305 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RN7SL629P-201ENST00000489622 285 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 RNU4-71P-201ENST00000516258 113 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 SNORA70.20-201ENST00000516848 126 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 SNORA81.3-201ENST00000517283 198 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 CASP1P1-201ENST00000526345 212 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 MIR4300-201ENST00000581016 96 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC060766.3-201ENST00000591442 263 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC073410.2-201ENST00000603240 332 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 AC136601.2-201ENST00000604356 474 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 Y_RNA.772-201ENST00000606692 102 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
DEPDC4Q8N2C3 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 MIR375-201ENST00000362103 64 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 RNU6-78P-201ENST00000362897 107 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 RNU4-9P-201ENST00000364951 139 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 BX510359.3-201ENST00000422168 306 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 TMEM167AP1-201ENST00000423409 219 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 SNRPEP9-201ENST00000436794 238 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC006026.2-201ENST00000457376 180 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 SNORA31.18-201ENST00000517043 134 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC022868.1-201ENST00000517767 391 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC007458.1-201ENST00000542812 373 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 BX284668.6-201ENST00000606899 438 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC090607.5-201ENST00000615692 224 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AC090617.7-201ENST00000623952 126 ntBASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
DEPDC4Q8N2C3 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
DEPDC4Q8N2C3 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms