Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL157871.3-201ENST00000557231 293 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR1273C-201ENST00000578669 77 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR4691-201ENST00000583764 85 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR548AC-201ENST00000585049 88 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC022726.1-201ENST00000587475 207 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RNU6-89P-201ENST00000606519 100 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR6862-1-201ENST00000613016 70 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR6862-2-201ENST00000614755 70 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 MIR8058-201ENST00000615737 89 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 XIST_intron.1-201ENST00000619444 68 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AL008636.1-201ENST00000625038 1018 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AP001148.1-201ENST00000624124 2359 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.86-201ENST00000363020 111 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-217P-201ENST00000384164 104 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-393P-201ENST00000384475 107 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-140P-201ENST00000384566 108 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 SNORD70.1-201ENST00000391007 85 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-332P-201ENST00000391193 108 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RNU4-26P-201ENST00000410270 107 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 MIR1911-201ENST00000410783 80 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RPS20P14-201ENST00000412545 360 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 BX323014.1-201ENST00000412876 237 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC009161.1-201ENST00000417306 376 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RBMY1KP-201ENST00000423480 476 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC012498.1-201ENST00000424037 437 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC002075.2-201ENST00000425207 252 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 UBE2CP3-201ENST00000502715 450 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 CCDC34P1-201ENST00000507441 517 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 SNORA20.3-201ENST00000516880 132 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 CENPUP1-201ENST00000526649 1202 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AL121579.1-201ENST00000555129 305 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 MIR5692A1-201ENST00000580523 69 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AL160290.3-201ENST00000604869 165 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 AC099778.2-201ENST00000610904 211 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 MIR6076-201ENST00000617521 113 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 MIR6886-201ENST00000619864 61 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 MFSD8-242ENST00000641690 4199 ntBASIC3.52□□□□□ -1.85
CCDC28AQ8IWP9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.160-201ENST00000363677 92 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-82P-201ENST00000363970 107 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.303-201ENST00000364998 94 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-395P-201ENST00000365662 106 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-434P-201ENST00000384376 107 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 U3.30-201ENST00000391308 210 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RPL21P17-201ENST00000397467 475 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RNU2-68P-201ENST00000410878 191 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RPL23AP27-201ENST00000415161 451 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RPL21P111-201ENST00000418453 477 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AL158156.1-201ENST00000422509 473 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 SNRPEP9-201ENST00000436794 238 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC079168.2-201ENST00000453977 416 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 ISCUP1-201ENST00000454451 448 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC091868.1-201ENST00000508746 304 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RNA5SP165-201ENST00000517142 115 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 IGKV2-38-201ENST00000517443 247 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC008011.1-201ENST00000545989 227 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC133555.2-201ENST00000550213 292 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 HMGB1P14-201ENST00000557424 591 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 RN7SL753P-201ENST00000581238 290 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 AC018638.8-201ENST00000588755 281 ntBASIC3.51□□□□□ -1.85
CCDC28AQ8IWP9 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms