Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 AC008739.2-201ENST00000597006 317 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 CKS1BP3-201ENST00000600888 237 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 AC073544.2-201ENST00000601155 540 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 AC084757.4-201ENST00000616350 526 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 SNHG22-203ENST00000617833 660 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 MIR7975-201ENST00000619350 68 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 AL356321.1-201ENST00000621360 228 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 U6.105-201ENST00000637379 88 ntBASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
NUP54Q7Z3B4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNU6-1284P-201ENST00000363701 100 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNU1-33P-201ENST00000364249 162 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNA5SP72-201ENST00000364442 117 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNY3P13-201ENST00000365542 102 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 MIR490-201ENST00000384865 128 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 Z99755.1-201ENST00000414048 380 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL353678.1-201ENST00000422735 741 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC093156.1-201ENST00000440382 670 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC016696.1-201ENST00000446949 318 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SSXP1-201ENST00000453640 473 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL033528.1-201ENST00000453780 140 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 snoU109.1-201ENST00000459339 135 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC010631.1-201ENST00000474150 156 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL135752.1-201ENST00000479477 471 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 APOOP4-201ENST00000513530 597 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 RNU6-56P-201ENST00000516986 93 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AP003181.2-201ENST00000528941 181 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 TRAV28-201ENST00000557548 323 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC067852.3-201ENST00000589177 561 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 HMGN1P30-201ENST00000589286 268 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL035413.2-201ENST00000604801 525 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AC087752.4-201ENST00000605911 462 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 AL136313.1-201ENST00000624804 202 ntBASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP54Q7Z3B4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 RNY4P16-201ENST00000364768 94 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 SNORA40.3-201ENST00000390964 122 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 MRPL42P2-201ENST00000403169 426 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AL359634.1-202ENST00000404721 284 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 RPS3AP3-201ENST00000411933 242 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC126124.2-201ENST00000413542 321 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC019097.1-201ENST00000424783 735 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AL365496.1-201ENST00000426885 215 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 MTCO2P16-201ENST00000436962 677 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 MTND6P13-201ENST00000443510 523 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 PRSS3P4-201ENST00000453323 162 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AL122001.1-201ENST00000457027 370 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 Y_RNA.672-201ENST00000516289 104 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 NRON-201ENST00000517270 370 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AP000873.5-201ENST00000533906 236 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC007115.1-201ENST00000546853 234 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC093012.1-202ENST00000549403 582 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC015917.1-201ENST00000579654 510 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 BNIP3P33-201ENST00000598912 569 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC131902.3-201ENST00000611767 581 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC009090.3-201ENST00000616553 565 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC012314.7-201ENST00000619693 93 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 SNORD39.4-201ENST00000620099 78 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC244100.1-202ENST00000621554 382 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 AP003399.1-201ENST00000637534 361 ntBASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NUP54Q7Z3B4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms