Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 KLHL2P1-201ENST00000508691 521 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNA5SP468-201ENST00000516782 93 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RN7SKP60-201ENST00000516985 239 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RN7SKP289-201ENST00000517244 295 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 CR383656.7-201ENST00000548164 174 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 ADI1P3-201ENST00000549509 470 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 BNIP3P33-201ENST00000598912 569 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 KC877982.1-201ENST00000602313 470 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AL162413.1-201ENST00000603198 110 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC093788.1-201ENST00000609356 927 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC069234.5-201ENST00000611056 416 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC015967.1-201ENST00000619893 476 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC002550.2-201ENST00000621246 394 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AL672296.1-201ENST00000427780 2158 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AF127577.6-201ENST00000623352 2191 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 RNA5SP119-201ENST00000362715 117 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 RNU6-1120P-201ENST00000362988 108 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 SNORD6-201ENST00000365444 73 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 MT-TL1-201ENST00000386347 75 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC009237.5-201ENST00000414271 501 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 RPS15AP12-201ENST00000419498 388 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 ELOCP4-201ENST00000420090 333 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 SNRPEP10-201ENST00000420249 274 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC012498.1-201ENST00000424037 437 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AP000907.1-201ENST00000428428 510 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 USP12PX-201ENST00000432383 1057 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 HMGB3P12-201ENST00000438745 556 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 CEACAMP4-201ENST00000457676 421 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC022364.2-201ENST00000457963 554 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC008155.2-201ENST00000464337 397 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 SNRPGP3-201ENST00000469405 227 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC114781.4-201ENST00000513707 639 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 RNA5SP337-201ENST00000517007 109 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC090572.1-201ENST00000519251 160 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 NRBF2P5-201ENST00000603087 788 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AL159972.1-201ENST00000625150 448 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 FER-210ENST00000628534 558 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 PRO1804-201ENST00000623780 2050 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 AL138713.1-201ENST00000624026 2130 ntBASIC4.16□□□□□ -1.74
VPS53Q5VIR6 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS53Q5VIR6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS53Q5VIR6 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS53Q5VIR6 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS53Q5VIR6 MIR30E-201ENST00000362104 92 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RNU6-1155P-201ENST00000363554 107 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RNU5A-8P-201ENST00000364102 114 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RNU6-456P-201ENST00000384493 107 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 Y_RNA.548-201ENST00000384656 105 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 MIR449B-201ENST00000384995 97 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 MIR218-2-201ENST00000385006 110 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RNU6-876P-201ENST00000391295 104 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RNU6-908P-201ENST00000410160 94 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 GPR143P-201ENST00000434155 205 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 TIMM9P1-201ENST00000436122 256 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RPL7P54-201ENST00000438336 674 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC079781.2-201ENST00000446424 169 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RPS4XP2-201ENST00000458402 793 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms