Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GMPSP1-201ENST00000514075 579 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 LRRC34P2-201ENST00000514850 553 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNU4-29P-201ENST00000515943 174 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-840P-201ENST00000517275 65 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 BNIP3P6-201ENST00000549284 499 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 ADI1P3-201ENST00000549509 470 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 MIR4429-201ENST00000580105 73 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC010525.2-201ENST00000590920 195 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC104763.2-201ENST00000604179 382 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC008945.2-201ENST00000606056 604 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 MIR92B-201ENST00000607575 96 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AL354798.1-201ENST00000622505 329 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 OR4G1P-203ENST00000641984 1631 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 ASNSP3-201ENST00000451989 1306 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 Y_RNA.70-201ENST00000362886 110 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 RNU1-89P-201ENST00000384592 164 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 Y_RNA.576-201ENST00000384781 102 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 TOMM22P1-201ENST00000418578 312 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC079780.1-201ENST00000428259 207 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 RPL21P112-201ENST00000434403 463 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL356535.1-201ENST00000440335 398 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 USP9YP8-201ENST00000441913 500 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 SNRPEP8-201ENST00000442866 260 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 CBWD4P-201ENST00000445695 655 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL118520.1-201ENST00000450770 291 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AP000873.1-201ENST00000463987 400 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC114786.4-201ENST00000508771 728 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC004062.1-201ENST00000509926 645 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC098591.2-201ENST00000510152 315 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 SNORA31.3-201ENST00000516029 96 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-875P-201ENST00000516488 106 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-685P-201ENST00000517088 95 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 MIR3158-1-201ENST00000583596 81 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 MIR4424-201ENST00000585257 86 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL355810.1-201ENST00000614629 552 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC006133.1-201ENST00000617106 264 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL713922.2-201ENST00000619384 716 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL589994.2-201ENST00000621124 579 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC010338.1-201ENST00000621823 717 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 C2orf27A-204ENST00000623058 969 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 PRO1804-201ENST00000623780 2050 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 AL354685.2-201ENST00000448218 1447 ntBASIC3.78□□□□□ -1.8
PTCHD3Q3KNS1 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
PTCHD3Q3KNS1 MTND4P14-201ENST00000435799 1354 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-213P-201ENST00000384051 104 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MIR514A2-201ENST00000385131 88 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MIR514A3-201ENST00000385132 88 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 OR6C66P-201ENST00000414917 930 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AF228730.2-201ENST00000438784 848 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MTND4LP16-201ENST00000440828 295 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AL500522.2-201ENST00000448562 343 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 MTND3P16-201ENST00000452205 344 ntBASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.77□□□□□ -1.81
PTCHD3Q3KNS1 AC091951.2-201ENST00000500762 203 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms