Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CDC42P1-201ENST00000456658 548 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 snoU13.4-201ENST00000458916 104 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD3Q12873 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD3Q12873 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD3Q12873 SNORA70.16-201ENST00000516390 95 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 COX6CP5-201ENST00000527162 228 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD3Q12873 GLYCAM1-201ENST00000546596 285 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD3Q12873 AC024614.2-201ENST00000577584 372 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 AC098657.3-201ENST00000620434 263 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 AL590396.2-201ENST00000636511 1041 ntBASIC1.49□□□□□ -2.17
CHD3Q12873 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CHD3Q12873 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CHD3Q12873 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CHD3Q12873 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 AC009237.2-201ENST00000421358 284 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AL121578.1-201ENST00000428051 892 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 USP9YP15-201ENST00000442391 422 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 OR4P1P-201ENST00000530808 1136 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 AC087481.2-201ENST00000565492 330 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AC007229.1-201ENST00000590455 412 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 AC025588.3-201ENST00000604182 274 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.48□□□□□ -2.17
CHD3Q12873 AC097504.2-201ENST00000608088 454 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AC020658.4-201ENST00000613987 684 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AC009318.4-201ENST00000620496 486 ntBASIC1.48□□□□□ -2.17
CHD3Q12873 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD3Q12873 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
CHD3Q12873 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.47□□□□□ -2.17
CHD3Q12873 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.47□□□□□ -2.17
CHD3Q12873 AL391987.6-201ENST00000305671 199 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 RNU6-234P-201ENST00000365229 104 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.47□□□□□ -2.17
CHD3Q12873 MICF-203ENST00000432679 129 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC024082.2-201ENST00000434771 238 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC009238.1-201ENST00000442165 424 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC009237.6-201ENST00000446969 424 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 TPT1P14-201ENST00000448018 505 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AL500527.1-201ENST00000448532 255 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 VPS26AP1-201ENST00000483197 979 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.47□□□□□ -2.17
CHD3Q12873 AC087441.2-201ENST00000529141 262 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CHD3Q12873 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.47□□□□□ -2.17
CHD3Q12873 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CHD3Q12873 U8.1-201ENST00000362843 134 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 SNORD82-201ENST00000365530 70 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 AC114973.1-201ENST00000429057 632 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AL353689.1-201ENST00000438895 199 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 SDCBPP1-201ENST00000440192 890 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 ATG12P2-201ENST00000456830 416 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 RNA5SP310-201ENST00000459084 116 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC096751.1-202ENST00000502691 1067 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 RNU6-1282P-201ENST00000516735 96 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.47□□□□□ -2.17
CHD3Q12873 AC008749.1-201ENST00000597650 306 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 MIR6515-201ENST00000619843 57 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.47□□□□□ -2.17
CHD3Q12873 AP003400.6-201ENST00000624698 740 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.47□□□□□ -2.17
CHD3Q12873 AL513185.3-201ENST00000433335 1300 ntBASIC1.47□□□□□ -2.17
CHD3Q12873 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CHD3Q12873 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD3Q12873 RNU6-444P-201ENST00000383988 108 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 CIR1P3-201ENST00000405137 479 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 RNU6-920P-201ENST00000410926 92 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC010385.1-201ENST00000412374 256 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 ZNF965P-201ENST00000432501 817 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.46□□□□□ -2.18
CHD3Q12873 MTCO1P31-201ENST00000506355 492 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC004217.3-201ENST00000551552 878 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CHD3Q12873 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC090666.1-201ENST00000578241 445 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms