Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 U2.15-201ENST00000611544 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 MIR6840-201ENST00000611937 71 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.16-201ENST00000613119 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.12-201ENST00000613778 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.20-201ENST00000613956 192 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.9-201ENST00000615427 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.11-201ENST00000616345 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.2-201ENST00000616535 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.3-201ENST00000617785 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.19-201ENST00000618602 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 RNU2-1-201ENST00000618664 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AL596245.1-201ENST00000618994 362 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.6-201ENST00000619225 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.5-201ENST00000619465 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 U2.10-201ENST00000620268 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC090772.4-201ENST00000623599 362 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 OR1S1-201ENST00000624470 978 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC106858.1-201ENST00000637497 429 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC010680.1-201ENST00000590024 3590 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC008568.2-201ENST00000623862 2313 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 HSPE1P11-201ENST00000339579 310 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 OR56A5-201ENST00000340110 738 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 RNA5SP432-201ENST00000362480 116 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 Y_RNA.548-201ENST00000384656 105 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 MIR524-201ENST00000385242 87 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 HMGB1P17-201ENST00000403495 628 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA1P55317 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA1P55317 MTCO2P5-201ENST00000422621 426 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA1P55317 SDCBPP1-201ENST00000440192 890 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC010095.1-201ENST00000443543 144 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA1P55317 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA1P55317 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA1P55317 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA1P55317 HMGB3P3-201ENST00000510526 400 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC022483.1-201ENST00000514020 567 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA1P55317 AC091163.3-201ENST00000518269 1144 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC010376.1-201ENST00000522101 334 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA1P55317 AC005832.3-201ENST00000537929 631 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 AC009063.1-201ENST00000563342 702 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA1P55317 AL132657.2-201ENST00000564417 358 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 MIR3921-201ENST00000577308 85 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 MIR3609-201ENST00000582661 80 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 U73023.1-201ENST00000603134 700 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC103710.1-201ENST00000610003 901 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC104763.3-201ENST00000613765 618 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC011330.2-201ENST00000621680 635 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 YWHAEP7-203ENST00000622054 312 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AC027309.3-201ENST00000623419 351 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AL359757.2-201ENST00000624309 274 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 AP002371.2-201ENST00000624450 503 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.92□□□□□ -2.1
FOXA1P55317 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
FOXA1P55317 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA1P55317 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA1P55317 AL356473.1-201ENST00000406203 1408 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA1P55317 RNU6-28P-201ENST00000362378 107 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 Y_RNA.472-201ENST00000384322 102 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 RNU6-1197P-201ENST00000391183 107 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AL590084.1-201ENST00000407885 387 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 MIR1290-201ENST00000408735 78 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 MORF4L1P6-201ENST00000418771 268 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AL139421.1-201ENST00000423010 169 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA1P55317 RPL23AP76-201ENST00000441860 458 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA1P55317 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA1P55317 SETP11-201ENST00000473027 690 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 RPL9P6-201ENST00000492764 598 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 ANXA2P1-201ENST00000505539 926 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC008837.2-201ENST00000513076 418 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC006499.2-201ENST00000513470 337 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 RNY4P37-201ENST00000516225 96 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 RNU6-798P-201ENST00000516912 103 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC025755.1-201ENST00000521306 278 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.91□□□□□ -2.1
FOXA1P55317 AC090615.1-201ENST00000577519 154 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 MIR5694-201ENST00000581190 76 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 MIR3935-201ENST00000583472 104 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA1P55317 AL590099.1-201ENST00000615276 138 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC006213.4-201ENST00000616184 634 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA1P55317 AC013437.2-201ENST00000639587 677 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms