Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
HOXA1P49639 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.07□□□□□ -1.92
HOXA1P49639 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 AC004972.1-201ENST00000623934 2209 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 RNU6-1322P-201ENST00000364309 107 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 SNORA69-201ENST00000383895 132 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 SNORA24.1-201ENST00000384401 135 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 RNU6-606P-201ENST00000384721 111 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 MIR607-201ENST00000385241 96 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 U3.22-201ENST00000391120 215 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 SAR1AP2-201ENST00000392696 594 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 NDUFS5P1-201ENST00000405668 289 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 TXNP7-201ENST00000406296 293 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 RNU6-1068P-201ENST00000410958 103 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXA1P49639 EI24P1-201ENST00000416584 867 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA1P49639 AL109913.1-201ENST00000421173 514 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 MED13P1-201ENST00000428342 171 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC016691.1-201ENST00000441321 413 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 WASF1P1-201ENST00000447560 1131 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXA1P49639 RNU7-63P-201ENST00000459054 62 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA1P49639 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA1P49639 RN7SKP282-201ENST00000516824 299 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 SNORA31.26-201ENST00000517250 137 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXA1P49639 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC109635.4-202ENST00000531666 412 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 OR5B19P-201ENST00000531766 928 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 OR5AL2P-201ENST00000532185 920 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AP005205.1-201ENST00000563503 508 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 MTCO3P24-201ENST00000572729 782 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 AC078899.3-201ENST00000599065 212 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AL133393.1-201ENST00000603277 287 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AL137849.1-201ENST00000604767 169 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AL035413.2-201ENST00000604801 525 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 RNU4-89P-201ENST00000607443 133 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AL136295.6-201ENST00000610486 658 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC002553.4-201ENST00000616896 331 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 YWHAEP7-203ENST00000622054 312 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 MIR3662-201ENST00000637030 95 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 API5P2-201ENST00000397055 1498 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA1P49639 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 AC010733.2-201ENST00000589496 5702 ntBASIC3.07□□□□□ -1.92
HOXA1P49639 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA1P49639 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA1P49639 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA1P49639 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA1P49639 MIR30E-201ENST00000362104 92 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA1P49639 SNORA36C-201ENST00000384289 132 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 RAC1P6-201ENST00000423911 575 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 AC114755.5-201ENST00000447760 831 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 MRPS17P3-201ENST00000465453 385 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC083798.1-201ENST00000472671 131 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 RPS27AP1-201ENST00000475545 471 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC084198.1-201ENST00000477747 402 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 RPL36AP51-201ENST00000487216 318 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 AC116562.3-201ENST00000506136 177 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC092436.1-201ENST00000506450 503 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 RNA5SP208-201ENST00000516156 78 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 SNORD27.1-201ENST00000516319 72 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 SNORA40.12-201ENST00000516329 111 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 RNU6-1092P-201ENST00000516955 87 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 ERHP1-201ENST00000523006 310 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AP003730.1-201ENST00000524605 285 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC068587.5-201ENST00000528506 175 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC007536.1-201ENST00000533382 349 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms