Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC114322.1-201ENST00000506771 926 ntBASIC1.72□□□□□ -2.13
CUX1P39880 DPRXP5-201ENST00000604662 539 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AC011330.2-201ENST00000621680 635 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AC007342.9-201ENST00000623877 1385 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AC099654.7-201ENST00000635788 2127 ntBASIC1.72□□□□□ -2.13
CUX1P39880 RNU1-62P-201ENST00000362599 164 ntBASIC1.71□□□□□ -2.14
CUX1P39880 RNA5SP257-201ENST00000363023 116 ntBASIC1.71□□□□□ -2.14
CUX1P39880 RNU6-997P-201ENST00000384725 107 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AC098592.2-201ENST00000413158 265 ntBASIC1.71□□□□□ -2.14
CUX1P39880 TPRKBP1-201ENST00000456243 481 ntBASIC1.71□□□□□ -2.14
CUX1P39880 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.71□□□□□ -2.14
CUX1P39880 SULT1C2P1-202ENST00000562418 459 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AC233266.2-201ENST00000567067 528 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.71□□□□□ -2.14
CUX1P39880 SNRPGP15-201ENST00000600149 222 ntBASIC1.71□□□□□ -2.14
CUX1P39880 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.71□□□□□ -2.14
CUX1P39880 AC020658.4-201ENST00000613987 684 ntBASIC1.71□□□□□ -2.14
CUX1P39880 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CUX1P39880 Y_RNA.458-201ENST00000384240 102 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC1.71□□□□□ -2.14
CUX1P39880 CYCSP48-201ENST00000417124 323 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AL691517.1-201ENST00000440833 1235 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AL627224.1-201ENST00000448334 444 ntBASIC1.71□□□□□ -2.14
CUX1P39880 TRBV8-1-201ENST00000481590 279 ntBASIC1.71□□□□□ -2.14
CUX1P39880 RPS15AP34-201ENST00000487776 387 ntBASIC1.71□□□□□ -2.14
CUX1P39880 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.71□□□□□ -2.14
CUX1P39880 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.71□□□□□ -2.14
CUX1P39880 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.71□□□□□ -2.14
CUX1P39880 AC112191.3-201ENST00000604371 277 ntBASIC1.71□□□□□ -2.14
CUX1P39880 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CUX1P39880 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
CUX1P39880 Y_RNA.115-201ENST00000363272 98 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AC244098.2-201ENST00000422068 99 ntBASIC1.7□□□□□ -2.14
CUX1P39880 UBE2V1P6-201ENST00000430840 422 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AL596276.1-201ENST00000434465 418 ntBASIC1.7□□□□□ -2.14
CUX1P39880 GDI2P2-201ENST00000445131 608 ntBASIC1.7□□□□□ -2.14
CUX1P39880 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.7□□□□□ -2.14
CUX1P39880 KLRA1P-201ENST00000503499 986 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.7□□□□□ -2.14
CUX1P39880 CYP3A137P-201ENST00000562436 69 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AC090525.3-201ENST00000605601 189 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AC034236.3-201ENST00000605999 461 ntBASIC1.7□□□□□ -2.14
CUX1P39880 AL020996.3-201ENST00000606617 222 ntBASIC1.7□□□□□ -2.14
CUX1P39880 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.7□□□□□ -2.14
CUX1P39880 AC009090.3-201ENST00000616553 565 ntBASIC1.7□□□□□ -2.14
CUX1P39880 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CUX1P39880 AC010889.1-201ENST00000566193 2666 ntBASIC1.69□□□□□ -2.14
CUX1P39880 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CUX1P39880 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CUX1P39880 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CUX1P39880 MIR513A1-201ENST00000385138 129 ntBASIC1.69□□□□□ -2.14
CUX1P39880 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CUX1P39880 RPL31P63-201ENST00000422565 375 ntBASIC1.69□□□□□ -2.14
CUX1P39880 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.69□□□□□ -2.14
CUX1P39880 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.69□□□□□ -2.14
CUX1P39880 RPL23AP33-201ENST00000442301 452 ntBASIC1.69□□□□□ -2.14
CUX1P39880 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.69□□□□□ -2.14
CUX1P39880 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.69□□□□□ -2.14
CUX1P39880 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.69□□□□□ -2.14
CUX1P39880 MIR1273G-201ENST00000577677 100 ntBASIC1.69□□□□□ -2.14
CUX1P39880 AL355816.1-201ENST00000607951 118 ntBASIC1.69□□□□□ -2.14
CUX1P39880 AC245884.12-201ENST00000615364 59 ntBASIC1.69□□□□□ -2.14
CUX1P39880 AL442644.1-201ENST00000454390 3105 ntBASIC1.69□□□□□ -2.14
CUX1P39880 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.68□□□□□ -2.14
CUX1P39880 RNU6-50P-201ENST00000362356 103 ntBASIC1.68□□□□□ -2.14
CUX1P39880 AL138880.1-201ENST00000405824 642 ntBASIC1.68□□□□□ -2.14
CUX1P39880 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.68□□□□□ -2.14
CUX1P39880 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.68□□□□□ -2.14
CUX1P39880 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.68□□□□□ -2.14
CUX1P39880 AP000949.1-201ENST00000438328 629 ntBASIC1.68□□□□□ -2.14
CUX1P39880 ARL5AP2-201ENST00000444698 533 ntBASIC1.68□□□□□ -2.14
CUX1P39880 RNA5SP233-201ENST00000459153 113 ntBASIC1.68□□□□□ -2.14
CUX1P39880 PABPC1P3-201ENST00000469174 459 ntBASIC1.68□□□□□ -2.14
CUX1P39880 NDUFS5P6-201ENST00000529136 295 ntBASIC1.68□□□□□ -2.14
CUX1P39880 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.68□□□□□ -2.14
CUX1P39880 CENPUP2-201ENST00000555897 1186 ntBASIC1.68□□□□□ -2.14
CUX1P39880 MIR4714-201ENST00000580728 77 ntBASIC1.68□□□□□ -2.14
CUX1P39880 AC106791.2-201ENST00000604680 391 ntBASIC1.68□□□□□ -2.14
CUX1P39880 AC108706.1-201ENST00000611053 297 ntBASIC1.68□□□□□ -2.14
CUX1P39880 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CUX1P39880 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC1.67□□□□□ -2.14
CUX1P39880 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.67□□□□□ -2.14
CUX1P39880 RPL31P41-201ENST00000477967 372 ntBASIC1.67□□□□□ -2.14
CUX1P39880 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CUX1P39880 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CUX1P39880 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.67□□□□□ -2.14
CUX1P39880 AC083923.1-201ENST00000523708 376 ntBASIC1.67□□□□□ -2.14
CUX1P39880 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.67□□□□□ -2.14
CUX1P39880 AC105245.1-201ENST00000581934 244 ntBASIC1.67□□□□□ -2.14
CUX1P39880 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.67□□□□□ -2.14
CUX1P39880 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CUX1P39880 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.66□□□□□ -2.14
CUX1P39880 HMGB1P49-201ENST00000418882 569 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AL353718.1-201ENST00000451028 517 ntBASIC1.66□□□□□ -2.14
CUX1P39880 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.66□□□□□ -2.14
CUX1P39880 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.66□□□□□ -2.14
CUX1P39880 CYCSP26-201ENST00000534107 320 ntBASIC1.66□□□□□ -2.14
CUX1P39880 IMMP1LP2-201ENST00000552954 492 ntBASIC1.66□□□□□ -2.14
CUX1P39880 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.66□□□□□ -2.14
CUX1P39880 AC007742.2-201ENST00000618226 398 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms