Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HMGA1P17096 Y_RNA.508-201ENST00000384502 114 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 MIR518E-201ENST00000385252 88 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
HMGA1P17096 USP9YP6-201ENST00000413550 854 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 OR6C66P-201ENST00000414917 930 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.11□□□□□ -2.23
HMGA1P17096 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.11□□□□□ -2.23
HMGA1P17096 EIF4EP5-201ENST00000528228 640 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.11□□□□□ -2.23
HMGA1P17096 AL160236.1-201ENST00000556317 195 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.11□□□□□ -2.23
HMGA1P17096 SNORD114-21-201ENST00000606412 72 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 AC096586.2-201ENST00000610260 441 ntBASIC1.11□□□□□ -2.23
HMGA1P17096 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
HMGA1P17096 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
HMGA1P17096 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
HMGA1P17096 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
HMGA1P17096 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
HMGA1P17096 RNA5SP276-201ENST00000362580 94 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 Y_RNA.796-201ENST00000364268 102 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 Y_RNA.799-201ENST00000364992 102 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 OR1L1-202ENST00000373686 1083 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 MIR520E-201ENST00000384867 87 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 MIR1250-201ENST00000408098 113 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.1□□□□□ -2.23
HMGA1P17096 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.1□□□□□ -2.23
HMGA1P17096 MTCYBP34-201ENST00000439552 670 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 AC004022.1-201ENST00000447766 1066 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 TRGVB-201ENST00000453257 471 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 PABPC1P3-201ENST00000469174 459 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 SYPL1P1-201ENST00000473622 768 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 RPL30P12-201ENST00000474666 353 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.1□□□□□ -2.23
HMGA1P17096 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.1□□□□□ -2.23
HMGA1P17096 AC091965.2-201ENST00000512324 613 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 RNU6-970P-201ENST00000516312 107 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.1□□□□□ -2.23
HMGA1P17096 SNORA4-201ENST00000584302 138 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.1□□□□□ -2.23
HMGA1P17096 UCA1.1-201ENST00000620952 75 ntBASIC1.1□□□□□ -2.23
HMGA1P17096 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.1□□□□□ -2.23
HMGA1P17096 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
HMGA1P17096 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.23
HMGA1P17096 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
HMGA1P17096 MIR320B1-201ENST00000390209 79 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 RNA5SP354-201ENST00000391247 136 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 RNU6-955P-201ENST00000410497 104 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGA1P17096 BMI1P1-201ENST00000445879 941 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGA1P17096 AL121769.1-201ENST00000469473 401 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 AC132942.1-201ENST00000486753 483 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 RN7SKP265-201ENST00000516448 223 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.09□□□□□ -2.23
HMGA1P17096 AC074029.2-201ENST00000551045 634 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.09□□□□□ -2.23
HMGA1P17096 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGA1P17096 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGA1P17096 AC025165.5-201ENST00000602802 578 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 AC084373.1-201ENST00000603311 235 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
HMGA1P17096 AC003001.2-201ENST00000616294 831 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 MIR6864-201ENST00000617935 70 ntBASIC1.09□□□□□ -2.23
HMGA1P17096 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.09□□□□□ -2.23
HMGA1P17096 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.09□□□□□ -2.24
HMGA1P17096 MFSD8-213ENST00000641134 1327 ntBASIC1.09□□□□□ -2.24
HMGA1P17096 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
HMGA1P17096 RPL21P1-201ENST00000399532 476 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AL356432.1-201ENST00000405809 419 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AL161449.1-201ENST00000414531 1199 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.08□□□□□ -2.24
HMGA1P17096 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
HMGA1P17096 AL357134.1-201ENST00000445848 426 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.08□□□□□ -2.24
HMGA1P17096 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGA1P17096 MTCO1P48-201ENST00000448024 1096 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGA1P17096 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.08□□□□□ -2.24
HMGA1P17096 RNU7-27P-201ENST00000459281 62 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AL121594.1-201ENST00000475906 575 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 RPL31P41-201ENST00000477967 372 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 RPS23P4-201ENST00000487908 423 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC026801.1-201ENST00000497178 464 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC098862.1-201ENST00000504991 413 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGA1P17096 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGA1P17096 AP004247.1-201ENST00000531556 1289 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC005034.5-201ENST00000604219 466 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC126118.1-201ENST00000607744 628 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 AC015726.3-201ENST00000624501 418 ntBASIC1.08□□□□□ -2.24
HMGA1P17096 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
HMGA1P17096 AL022578.1-201ENST00000439330 1433 ntBASIC1.07□□□□□ -2.24
HMGA1P17096 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
HMGA1P17096 Y_RNA.269-201ENST00000364685 89 ntBASIC1.07□□□□□ -2.24
HMGA1P17096 RNY1P14-201ENST00000384426 108 ntBASIC1.07□□□□□ -2.24
HMGA1P17096 RNU1-148P-201ENST00000384472 162 ntBASIC1.07□□□□□ -2.24
HMGA1P17096 CISD1P1-201ENST00000393907 327 ntBASIC1.07□□□□□ -2.24
HMGA1P17096 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.07□□□□□ -2.24
HMGA1P17096 SEPT2P1-201ENST00000419651 180 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms