Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNORA26.8-201ENST00000391306 124 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 U3.39-201ENST00000408569 239 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 AC107081.1-201ENST00000414975 361 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.28□□□□□ -1.72
HMGB1P09429 RPL23AP30-201ENST00000432419 501 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 OSTCP8-201ENST00000445117 448 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGB1P09429 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGB1P09429 SNRPFP4-201ENST00000456366 242 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGB1P09429 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.28□□□□□ -1.72
HMGB1P09429 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGB1P09429 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGB1P09429 RNU6-914P-201ENST00000516749 109 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 RNU6-703P-201ENST00000516946 107 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGB1P09429 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGB1P09429 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGB1P09429 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGB1P09429 AL121821.2-201ENST00000556081 394 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 RPL21P12-201ENST00000559810 515 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 AC006077.1-201ENST00000604746 343 ntBASIC4.28□□□□□ -1.72
HMGB1P09429 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HMGB1P09429 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HMGB1P09429 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.28□□□□□ -1.73
HMGB1P09429 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGB1P09429 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGB1P09429 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HMGB1P09429 U8.11-201ENST00000384699 133 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 U8.12-201ENST00000384701 133 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 RPL23AP32-201ENST00000395315 459 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGB1P09429 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HMGB1P09429 AC127391.1-201ENST00000411737 98 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.27□□□□□ -1.73
HMGB1P09429 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.27□□□□□ -1.73
HMGB1P09429 AC092427.1-202ENST00000430569 476 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 HMGN2P10-201ENST00000448085 265 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGB1P09429 U8.18-201ENST00000459285 133 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 MTND3P7-201ENST00000474435 343 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 TRBV1-201ENST00000476502 284 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.27□□□□□ -1.73
HMGB1P09429 RNU2-27P-201ENST00000516185 142 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.27□□□□□ -1.73
HMGB1P09429 AC007991.1-201ENST00000522680 631 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AC006199.1-201ENST00000548728 219 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.27□□□□□ -1.73
HMGB1P09429 AL133173.2-201ENST00000614270 90 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 AP003355.3-201ENST00000623465 114 ntBASIC4.27□□□□□ -1.73
HMGB1P09429 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGB1P09429 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HMGB1P09429 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGB1P09429 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.26□□□□□ -1.73
HMGB1P09429 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HMGB1P09429 RN7SKP226-201ENST00000364912 300 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 SNORA4.3-201ENST00000365564 137 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGB1P09429 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGB1P09429 AL512633.1-201ENST00000399931 655 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.26□□□□□ -1.73
HMGB1P09429 RPS15AP6-201ENST00000420703 385 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AL158156.1-201ENST00000422509 473 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC007560.1-201ENST00000426912 237 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.26□□□□□ -1.73
HMGB1P09429 GZMAP1-201ENST00000503054 631 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 HMGN1P11-201ENST00000508668 303 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 RNU6-1183P-201ENST00000517054 60 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 RN7SKP40-201ENST00000517211 242 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC026407.1-201ENST00000518369 204 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.26□□□□□ -1.73
HMGB1P09429 AC025755.1-201ENST00000521306 278 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AP003122.3-201ENST00000526316 255 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC084851.1-201ENST00000529105 249 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AL158211.1-201ENST00000566763 763 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 MIR4782-201ENST00000577987 79 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 MIR4738-201ENST00000579134 87 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 MIR3117-201ENST00000584034 78 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC005771.1-201ENST00000585581 349 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AC108479.2-201ENST00000617314 601 ntBASIC4.26□□□□□ -1.73
HMGB1P09429 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.26□□□□□ -1.73
HMGB1P09429 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HMGB1P09429 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGB1P09429 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HMGB1P09429 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HMGB1P09429 AL161912.2-201ENST00000565707 3007 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HMGB1P09429 RNU6-461P-201ENST00000364195 107 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HMGB1P09429 DYNLT3P1-201ENST00000378574 347 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 SNORA20.2-201ENST00000383922 131 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 RNU6-641P-201ENST00000384006 107 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AL356057.2-201ENST00000403318 432 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 MIR1193-201ENST00000408109 78 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 ATP5A1P2-201ENST00000412323 255 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.25□□□□□ -1.73
HMGB1P09429 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.25□□□□□ -1.73
HMGB1P09429 AL161651.1-201ENST00000440882 223 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 NOTCH2P1-201ENST00000443481 624 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 RPS3AP46-201ENST00000448352 682 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms