Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL162395.1-201ENST00000457882 422 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC108751.2-201ENST00000469993 231 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AL135752.1-201ENST00000479477 471 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 RBBP4P6-201ENST00000508098 202 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC006445.2-201ENST00000510061 472 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC104619.4-201ENST00000510773 249 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC011352.1-201ENST00000512300 793 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-1281P-201ENST00000516223 105 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC109635.3-201ENST00000529536 185 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AK6P1-201ENST00000540219 478 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 MIR3922-201ENST00000585192 84 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC008521.1-201ENST00000587471 187 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC008945.2-201ENST00000606056 604 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AL512643.1-201ENST00000635735 524 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 RPL7P26-201ENST00000333817 754 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 Y_RNA.450-201ENST00000384198 113 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 CISD1P1-201ENST00000393907 327 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 MIR1911-201ENST00000410783 80 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 RPL30P2-201ENST00000414021 291 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC092047.1-201ENST00000424997 240 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AL596276.1-201ENST00000434465 418 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC016691.1-201ENST00000441321 413 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 CYCSP35-201ENST00000451978 304 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 GMFBP1-201ENST00000467831 427 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 RPL32P34-201ENST00000486380 400 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 RPS15AP34-201ENST00000487776 387 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 RNU1-103P-201ENST00000516502 125 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 MIR4703-201ENST00000577728 79 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 MTATP6P3-201ENST00000581686 676 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC103710.3-201ENST00000608157 948 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 MIR7975-201ENST00000619350 68 ntBASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC9Q9Y3X0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SNORA60-201ENST00000362396 134 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SNORD96B-201ENST00000386148 79 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SNORD115-47-201ENST00000391226 86 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL078595.1-201ENST00000404458 226 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 BTF3P7-201ENST00000407097 488 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SNORA74C-2-201ENST00000411179 201 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL035423.1-201ENST00000420331 213 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 TRBV1-201ENST00000476502 284 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC233702.1-201ENST00000482905 502 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-914P-201ENST00000516749 109 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 OR5B10P-201ENST00000532869 642 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC011602.1-201ENST00000546484 331 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC087499.8-201ENST00000578406 226 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AL162413.1-201ENST00000603198 110 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AP002360.3-201ENST00000607673 710 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC006111.3-201ENST00000622137 383 ntBASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC9Q9Y3X0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms