Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 MIR7112-201ENST00000616126 65 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 FRG1KP-201ENST00000623592 341 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS28Q9UK41 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS28Q9UK41 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS28Q9UK41 SNORA38.1-201ENST00000364172 131 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 ZNF90P2-204ENST00000419323 1075 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 ARPC3P1-201ENST00000437218 533 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC006028.1-201ENST00000438379 402 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 RPS3AP12-201ENST00000443616 753 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 SNORD97-201ENST00000459187 142 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 MTND3P7-201ENST00000474435 343 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 RBM43P1-201ENST00000476891 1081 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC116337.2-201ENST00000477662 156 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 MTCO1P47-201ENST00000523889 1271 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 OSBPL9P5-201ENST00000542581 171 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC128657.1-201ENST00000549459 145 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC008088.1-201ENST00000580993 280 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 AP000860.1-201ENST00000605250 559 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC107294.3-201ENST00000609211 526 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC004852.3-201ENST00000614131 326 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AL157817.1-201ENST00000614264 790 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 AC006338.1-201ENST00000618453 749 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 Z99129.2-201ENST00000619967 314 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 SNORD39.4-201ENST00000620099 78 ntBASIC3.37□□□□□ -1.87
VPS28Q9UK41 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VPS28Q9UK41 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS28Q9UK41 AL021368.2-201ENST00000606125 5352 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 RNU1-70P-201ENST00000362618 164 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 SNORD56.3-201ENST00000363507 71 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 Y_RNA.245-201ENST00000364493 95 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS28Q9UK41 MRPL42P2-201ENST00000403169 426 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 Y_RNA.598-201ENST00000410480 95 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC063979.1-201ENST00000415539 377 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 RPS15AP12-201ENST00000419498 388 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 TRIAP1P1-201ENST00000427062 225 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 HMGB1P27-201ENST00000431429 603 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 ATP5C1P1-201ENST00000441945 895 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 BET1P1-201ENST00000482276 359 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC006483.1-201ENST00000487308 313 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 ARL4AP2-201ENST00000507378 601 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 SNORA70.24-201ENST00000517233 118 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC011979.2-201ENST00000527568 352 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 MIR5680-201ENST00000577577 84 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 MIR5195-201ENST00000583555 115 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS28Q9UK41 U73023.1-201ENST00000603134 700 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.6-201ENST00000603753 252 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.11-201ENST00000604059 253 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC008162.1-201ENST00000604718 254 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.1-201ENST00000604752 252 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.5-201ENST00000605253 252 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.12-201ENST00000605291 253 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.8-201ENST00000605353 252 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 AL670379.7-201ENST00000605823 252 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 uc_338.1-201ENST00000612113 180 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS28Q9UK41 AC034102.8-201ENST00000615146 484 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.36□□□□□ -1.87
VPS28Q9UK41 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS28Q9UK41 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS28Q9UK41 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms