Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC012498.1-201ENST00000424037 437 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AL593851.1-201ENST00000426171 157 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 ELOCP30-201ENST00000447108 299 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 RNU7-59P-201ENST00000459101 61 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC008481.1-201ENST00000463278 396 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC006483.1-201ENST00000487308 313 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC055855.1-201ENST00000489563 579 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 RNA5SP291-201ENST00000517222 105 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AP000907.2-201ENST00000530827 353 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC007954.1-201ENST00000554198 494 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC009094.1-201ENST00000564443 426 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC138761.3-201ENST00000579993 334 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AP001004.1-201ENST00000582468 324 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 NUTF2P8-201ENST00000604593 363 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC107214.2-201ENST00000608204 634 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC005046.1-201ENST00000608515 625 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC140725.3-201ENST00000616193 880 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AC007671.2-201ENST00000637344 619 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 MIR26A1-201ENST00000362205 77 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNY4P24-201ENST00000362735 96 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU6-660P-201ENST00000364566 109 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU6-1027P-201ENST00000383998 107 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU6-198P-201ENST00000384258 104 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU6-1035P-201ENST00000384477 107 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 MIR181B1-201ENST00000385240 110 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL360182.1-201ENST00000397433 468 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNA5SP21-201ENST00000410917 96 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL513331.1-201ENST00000411908 397 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RAP1BP1-201ENST00000412709 553 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RPL21P24-201ENST00000413752 448 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 USP12PX-201ENST00000432383 1057 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC112220.1-201ENST00000434628 355 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LARP1BP3-201ENST00000437229 869 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC092798.1-201ENST00000458542 409 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RPS20P22-201ENST00000473700 357 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC090525.1-201ENST00000479116 478 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LARP1BP2-201ENST00000486594 519 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 OR5BM1P-201ENST00000512021 366 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNA5SP356-201ENST00000515972 94 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU6-390P-201ENST00000516259 103 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNU1-103P-201ENST00000516502 125 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 Y_RNA.717-201ENST00000517106 92 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 RNA5SP380-201ENST00000517190 98 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LRRC34P1-201ENST00000542742 915 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 TRAV28-201ENST00000557548 323 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 MIR4307-201ENST00000582802 84 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC002545.1-201ENST00000592511 181 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC008751.2-201ENST00000597885 980 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL353778.1-201ENST00000603149 408 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC026790.2-201ENST00000606282 430 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL161629.2-201ENST00000615347 275 ntBASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LHX3Q9UBR4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
LHX3Q9UBR4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LHX3Q9UBR4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC091564.4-201ENST00000533934 2194 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC010680.1-201ENST00000590024 3590 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 RNU6-270P-201ENST00000364131 105 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 CCNG1P1-201ENST00000406783 885 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.77□□□□□ -1.97
LHX3Q9UBR4 VPS26BP1-201ENST00000417155 755 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC092047.1-201ENST00000424997 240 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 RPL7P46-201ENST00000425129 740 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC007919.1-201ENST00000429380 217 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 AC244505.4-201ENST00000434905 287 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 MTCYBP39-201ENST00000437562 491 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 Z82210.1-201ENST00000440037 231 ntBASIC2.77□□□□□ -1.97
LHX3Q9UBR4 SSXP5-201ENST00000443473 287 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms