Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 BNIP3P6-201ENST00000549284 499 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 MTND6P33-201ENST00000571794 183 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC008521.1-201ENST00000587471 187 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC024220.1-201ENST00000603675 484 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 SNORA51-201ENST00000606420 132 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AL136221.1-201ENST00000621449 509 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC106871.1-201ENST00000568324 3102 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC008725.1-201ENST00000605123 2263 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.263-201ENST00000364659 114 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 SNORA73.2-201ENST00000364946 201 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RNU4-66P-201ENST00000365199 138 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 SNORA3C-201ENST00000408792 125 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.615-201ENST00000410769 117 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RNU6-1148P-201ENST00000410992 104 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 BX323014.1-201ENST00000412876 237 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RPL30P2-201ENST00000414021 291 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC006946.1-201ENST00000429106 328 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 HMGB3P30-201ENST00000457863 606 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RN7SL585P-201ENST00000470538 280 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RPS26P28-201ENST00000470806 348 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 HSPE1P6-201ENST00000479457 291 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RNU6-685P-201ENST00000517088 95 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 RN7SKP258-201ENST00000517151 304 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC109635.4-202ENST00000531666 412 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC087499.8-201ENST00000578406 226 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AL365204.3-201ENST00000612448 685 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC012409.4-201ENST00000612923 249 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC022140.2-201ENST00000623500 188 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 AC103710.2-202ENST00000641454 2853 ntBASIC4.06□□□□□ -1.76
TDP1Q9NUW8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
TDP1Q9NUW8 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 MTND4P14-201ENST00000435799 1354 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC010733.2-201ENST00000589496 5702 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 U1.1-201ENST00000384101 164 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNU6-1181P-201ENST00000384191 106 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNU6-14P-201ENST00000384630 106 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 U8.11-201ENST00000384699 133 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 U8.12-201ENST00000384701 133 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNU6-550P-201ENST00000391057 101 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNA5SP239-201ENST00000410218 129 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNU4-46P-201ENST00000410818 138 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC009161.1-201ENST00000417306 376 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 PDCL2P1-201ENST00000419302 352 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 ELOCP23-201ENST00000452014 332 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 FABP5P13-201ENST00000452144 328 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 U8.18-201ENST00000459285 133 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC078817.1-201ENST00000492623 435 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC091885.1-201ENST00000506658 268 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RNU6-123P-201ENST00000516163 102 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC087369.1-201ENST00000520775 996 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 RANP3-201ENST00000530970 276 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 SNRPGP16-201ENST00000533275 226 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AL121576.1-201ENST00000556055 276 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 CYP4A43P-201ENST00000568156 121 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 MIR5583-1-201ENST00000580941 59 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 BDH2P1-201ENST00000602288 736 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AL390240.1-201ENST00000612950 384 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 uc_338.34-201ENST00000617467 174 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 PRO1804-201ENST00000623780 2050 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 TPTE2P4-201ENST00000258589 1605 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 2854 ms