Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC091903.1-201ENST00000624322 454 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 RNU6-1035P-201ENST00000384477 107 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 MIR128-1-201ENST00000384921 82 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 HSFY4P-201ENST00000415994 1181 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC005005.2-201ENST00000420779 380 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 USP9YP26-201ENST00000421008 661 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 RPS20P22-201ENST00000473700 357 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AP004217.1-201ENST00000480579 346 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 MTND1P22-201ENST00000510572 951 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 RNU6-390P-201ENST00000516259 103 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 RNA5SP291-201ENST00000517222 105 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC100870.1-201ENST00000522035 505 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AP002748.2-201ENST00000528671 348 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC123904.3-201ENST00000547218 814 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC008015.1-201ENST00000555505 465 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 TRAV28-201ENST00000557548 323 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 MTCO3P13-201ENST00000577757 781 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC023043.3-201ENST00000593113 385 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AL353778.1-201ENST00000603149 408 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC026790.2-201ENST00000606282 430 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC004223.4-201ENST00000612426 332 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX28Q9NUL7 AC092192.1-201ENST00000633154 1018 ntBASIC2.84□□□□□ -1.95
DDX28Q9NUL7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.84□□□□□ -1.96
DDX28Q9NUL7 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
DDX28Q9NUL7 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 Y_RNA.46-201ENST00000362695 102 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 RNU6-501P-201ENST00000364072 100 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 RNU6-270P-201ENST00000364131 105 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 SNORD88.1-201ENST00000408684 91 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 BX682237.1-201ENST00000415016 335 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL512286.1-201ENST00000439244 400 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 Z82210.1-201ENST00000440037 231 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC005094.1-201ENST00000440420 368 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL049734.2-201ENST00000441066 616 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 BNIP3P2-201ENST00000441221 577 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 ELOCP23-201ENST00000452014 332 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC108059.3-201ENST00000456388 214 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC010631.1-201ENST00000474150 156 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 LARP1BP2-201ENST00000486594 519 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 OR5BM1P-201ENST00000512021 366 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC116347.2-201ENST00000514912 523 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 ATP5F1P5-201ENST00000526403 760 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 DEFB108A-201ENST00000530110 222 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC091489.2-201ENST00000566263 604 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC002545.1-201ENST00000592511 181 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL161729.4-201ENST00000604650 476 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 Z99289.3-201ENST00000605586 594 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL360219.1-201ENST00000610230 366 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 MIR7844-201ENST00000616161 122 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 MIR8057-201ENST00000620957 69 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL356266.1-201ENST00000623311 483 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC079416.3-201ENST00000624479 549 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 MTND1P37-201ENST00000636562 264 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
DDX28Q9NUL7 AC022336.2-201ENST00000568966 2538 ntBASIC2.83□□□□□ -1.96
DDX28Q9NUL7 ZNF833P-201ENST00000424938 1494 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms