Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 RNU6-600P-201ENST00000362524 99 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 SNORA31-201ENST00000362607 130 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 RNU6-1167P-201ENST00000363227 94 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.387-201ENST00000383918 102 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 SNORA74C-2-201ENST00000411179 201 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC004552.1-201ENST00000419089 348 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AL451062.2-201ENST00000427515 271 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 HMGB3P11-201ENST00000440127 604 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC233279.1-201ENST00000455300 423 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 RPS26P3-201ENST00000470205 348 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC012181.1-201ENST00000479895 423 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC090543.2-201ENST00000483963 348 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC004057.1-201ENST00000485827 348 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AP002812.1-201ENST00000495378 474 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC002456.2-201ENST00000509356 380 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC090281.1-201ENST00000523019 276 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC010201.1-201ENST00000605051 540 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 ATP1B3P1-201ENST00000605365 821 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC006023.2-201ENST00000609916 167 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AL512643.1-201ENST00000635735 524 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 HSPA8P4-201ENST00000511877 1920 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.34□□□□□ -1.72
TRIM39Q9HCM9 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC008568.2-201ENST00000623862 2313 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC126755.2-208ENST00000327792 462 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC138969.1-213ENST00000331436 462 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU6-50P-201ENST00000362356 103 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.67-201ENST00000362870 100 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.301-201ENST00000364990 103 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 XGY1-201ENST00000381172 446 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU6-45P-201ENST00000384471 107 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU4-25P-201ENST00000410569 230 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU2-71P-201ENST00000411395 189 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC011933.1-201ENST00000413334 321 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AL669831.1-202ENST00000428504 417 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RPL23AP69-201ENST00000431134 458 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 VDAC1P3-201ENST00000434069 851 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 HSPD1P21-201ENST00000436541 245 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC107399.1-201ENST00000451226 265 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RPL21P41-201ENST00000459863 264 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RPL21P104-201ENST00000464143 478 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RN7SL303P-201ENST00000469773 251 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AL160314.1-201ENST00000490836 438 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 SNORA14.1-201ENST00000516113 141 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU6-256P-201ENST00000516747 97 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 RNU6-273P-201ENST00000516937 96 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 CYCSP27-201ENST00000527643 293 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC006270.2-201ENST00000578523 652 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 MIR548AC-201ENST00000585049 88 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC104662.1-201ENST00000604448 511 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 MIR378J-201ENST00000611988 109 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AL442067.2-201ENST00000614033 363 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 C2orf27A-204ENST00000623058 969 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC007546.2-201ENST00000623996 360 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 AC011944.2-201ENST00000624440 683 ntBASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM39Q9HCM9 USP8P1-201ENST00000494673 3183 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RNU6-1252P-201ENST00000363054 104 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 SNORA62-201ENST00000365493 153 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.474-201ENST00000384341 102 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms