Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AP000873.5-201ENST00000533906 236 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 UBL5P2-201ENST00000583788 219 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC006504.3-201ENST00000586818 523 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 BNIP3P8-201ENST00000597863 560 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC121334.2-201ENST00000605387 271 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC093732.2-201ENST00000607950 274 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 RMST_8.1-201ENST00000610287 165 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC245517.5-201ENST00000611529 162 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL390240.1-201ENST00000612950 384 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC010149.2-201ENST00000637608 315 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MIR7153-201ENST00000637758 57 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RNU1-75P-201ENST00000347264 129 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RNU6-7-201ENST00000364784 107 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 SNORA23-201ENST00000365128 182 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RNU6-8-201ENST00000365467 107 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 Y_RNA.553-201ENST00000384670 102 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 CCNG1P1-201ENST00000406783 885 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RNU2-62P-201ENST00000410868 191 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RN7SKP142-201ENST00000411236 328 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 HMGB3P11-201ENST00000440127 604 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC093156.1-201ENST00000440382 670 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC005094.1-201ENST00000440420 368 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC025750.2-201ENST00000442609 450 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 MTCO3P45-201ENST00000443036 613 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 SNORA70.16-201ENST00000516390 95 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 PSMA2P1-201ENST00000526365 646 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AP003122.4-201ENST00000530980 758 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC007115.1-201ENST00000546853 234 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC123904.2-201ENST00000548059 300 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RPL21P5-201ENST00000554662 472 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 RPL23AP84-201ENST00000571193 464 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 MIR3118-1-201ENST00000581787 76 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC009977.1-201ENST00000586015 570 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC103710.1-201ENST00000610003 901 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC090970.3-201ENST00000612566 866 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC005858.4-201ENST00000623191 700 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC095031.1-201ENST00000623685 672 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AC091903.1-201ENST00000624322 454 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL137790.1-201ENST00000634283 177 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 AL136164.4-201ENST00000625013 2135 ntBASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC3Q9BQI4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 OR1S2-201ENST00000302592 978 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 SNORA7.4-201ENST00000384249 137 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RNU6-278P-201ENST00000390945 109 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC110754.1-201ENST00000399740 601 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 FCF1P10-201ENST00000407590 479 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RNU6-248P-201ENST00000410720 107 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RNU2-8P-201ENST00000410727 190 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RNA5SP229-201ENST00000410809 99 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 USP12PX-201ENST00000432383 1057 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 MTCO2P16-201ENST00000436962 677 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 MTND6P13-201ENST00000443510 523 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC016696.1-201ENST00000446949 318 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 ELOCP30-201ENST00000447108 299 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 ELOCP23-201ENST00000452014 332 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC010401.1-201ENST00000463867 348 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 UBE2DNL-203ENST00000474922 222 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 RPS15AP36-201ENST00000492022 382 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms