Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 RNU7-23P-201ENST00000459465 62 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 RPL23AP11-201ENST00000475260 469 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 RPS15AP36-201ENST00000492022 382 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC106872.3-201ENST00000495104 446 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AP000857.1-201ENST00000532151 543 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC007954.1-201ENST00000554198 494 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC008669.1-201ENST00000565823 2178 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC136618.2-201ENST00000575091 400 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 BNIP3P40-201ENST00000596017 556 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 VN1R92P-201ENST00000598511 928 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 ATP1B3P1-201ENST00000605365 821 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC072039.2-201ENST00000608883 439 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC004852.3-201ENST00000614131 326 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 FO624990.1-201ENST00000636373 85 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS35Q96QK1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS35Q96QK1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS35Q96QK1 ZNF876P-202ENST00000398732 1485 ntBASIC2.71□□□□□ -1.97
VPS35Q96QK1 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS35Q96QK1 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 RNU6-433P-201ENST00000363216 104 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 RNU6-931P-201ENST00000363850 107 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 SNORD21-201ENST00000383953 95 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 RNU6-217P-201ENST00000384164 104 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 U3.26-201ENST00000391236 204 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL360182.1-201ENST00000397433 468 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL359704.1-201ENST00000411586 781 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL513331.1-201ENST00000411908 397 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL365496.1-201ENST00000426885 215 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 MTND1P32-201ENST00000433043 938 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 RPL36AP6-201ENST00000435770 321 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 UBBP3-201ENST00000445497 241 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AP1S2P1-201ENST00000457344 379 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS35Q96QK1 RPS27P26-201ENST00000494583 239 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 AC138853.1-201ENST00000503549 823 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 SNORA31.15-201ENST00000516771 132 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 GTF3AP2-201ENST00000557014 266 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 RPL12P50-201ENST00000603116 116 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 AL137843.1-201ENST00000605078 385 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 AC103706.2-201ENST00000638080 240 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS35Q96QK1 MTND5P33-201ENST00000571250 1450 ntBASIC2.71□□□□□ -1.98
VPS35Q96QK1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 RPL21P132-201ENST00000331267 462 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 RNU1-112P-201ENST00000364401 164 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 HMGB1P49-201ENST00000418882 569 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MTCO2P21-201ENST00000419780 677 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AL445669.1-201ENST00000426743 755 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 ZNF863P-201ENST00000426746 417 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 ZNF736P12Y-201ENST00000443152 1243 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 FAM103A2P-201ENST00000444122 354 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 Z96811.1-201ENST00000445880 108 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AP000705.1-201ENST00000454567 350 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC008481.1-201ENST00000463278 396 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC104685.1-201ENST00000502445 371 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 CDC42P4-201ENST00000510507 563 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 OR5BM1P-201ENST00000512021 366 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 RN7SKP132-201ENST00000516001 208 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC087373.1-201ENST00000524920 491 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 ELOCP31-201ENST00000540463 467 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC106782.4-201ENST00000568264 210 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MIR3670-2-201ENST00000582974 65 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MIR3670-1-201ENST00000584160 65 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MIR3670-3-201ENST00000584855 65 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AL161729.4-201ENST00000604650 476 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC097468.3-201ENST00000607956 456 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 AC024560.3-201ENST00000608482 349 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 MIR3670-4-201ENST00000612260 65 ntBASIC2.7□□□□□ -1.98
VPS35Q96QK1 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms