Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC108059.3-201ENST00000456388 214 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC008481.1-201ENST00000463278 396 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC109486.1-201ENST00000486833 374 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AP002812.1-201ENST00000495378 474 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC098862.1-201ENST00000504991 413 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 SAP18P1-201ENST00000512058 390 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 TTC39CP1-201ENST00000512513 755 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC087373.1-201ENST00000524920 491 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 RPL21P12-201ENST00000559810 515 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AL161729.4-201ENST00000604650 476 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC090115.4-201ENST00000609970 188 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC099506.2-201ENST00000623074 221 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC034229.5-201ENST00000624258 185 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 MTND1P37-201ENST00000636562 264 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
RPUSD4Q96CM3 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL049781.1-201ENST00000623195 3585 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RNU1-138P-201ENST00000384093 164 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RNU6-1035P-201ENST00000384477 107 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 MIR592-201ENST00000384959 97 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL031577.2-201ENST00000404133 280 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL359634.1-202ENST00000404721 284 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RN7SKP140-201ENST00000411196 284 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 HMGN2P30-201ENST00000423237 256 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC006028.1-201ENST00000438379 402 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC016696.1-201ENST00000446949 318 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL133217.1-201ENST00000450980 425 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 MTCO1P42-201ENST00000457379 726 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC013267.1-201ENST00000458227 267 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC087588.1-201ENST00000462203 316 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RN7SL863P-201ENST00000462370 296 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 BZW1P2-201ENST00000473537 826 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC109925.1-201ENST00000478069 331 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RPS29P2-201ENST00000479278 136 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RN7SL297P-201ENST00000483161 293 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RNU6-927P-201ENST00000516199 100 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 SNORA9.3-201ENST00000516383 129 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RPPH1-2P-201ENST00000516688 293 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 RNU6-840P-201ENST00000517275 65 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC106038.2-201ENST00000520706 568 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 DEFB108A-201ENST00000530110 222 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AP000907.2-201ENST00000530827 353 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC128657.1-201ENST00000549459 145 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL356432.3-201ENST00000568952 465 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 GLUD1P4-201ENST00000590914 418 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 OR10AB1P-201ENST00000609613 938 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC138749.5-201ENST00000611461 208 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC122133.1-201ENST00000613964 233 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AL162274.2-201ENST00000614406 332 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC116165.2-201ENST00000616705 206 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC138932.5-201ENST00000617759 563 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC092140.2-201ENST00000618027 521 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC009159.1-201ENST00000618386 642 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC112204.3-201ENST00000623822 332 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 MIR622-201ENST00000638396 96 ntBASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
RPUSD4Q96CM3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
RPUSD4Q96CM3 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.31□□□□□ -2.04
RPUSD4Q96CM3 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
RPUSD4Q96CM3 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms